3B6U,2VVG,3B6V


Conserved Protein Domain Family
KISc_KIF3

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cd01371: KISc_KIF3 
Click on image for an interactive view with Cn3D
Kinesin motor domain, kinesins II or KIF3_like proteins
Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.
Statistics
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PSSM-Id: 276822
Aligned: 11 rows
Threshold Bit Score: 595.595
Created: 5-Feb-2015
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
ATP bindingmicrotubule
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1:ATP binding site [chemical binding site]
Evidence:
  • Comment:interaction site for Mg ADP, ATP hydrolysis drives motor function
  • Structure:3B6U; Homo sapiens Motor Domain Of Human Kinesin Family Member 3b with bound ADP, contacts 4A
  • Citation:PMID 9485302

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1              #                                                                      
3B6U_A     21 ESVRVVVRCRPMNGKEKaasYDKVVDVDVklGQVSVKNPkgt-----ahEMPKTFTFDAVYDWNAKQFELYDETFRPLVD 95  human
NP_008985  13 DNVKVVVRCRPLNEREKsmcYKQAVSVDEmrGTITVHKTds------snEPPKTFTFDTVFGPESKQLDVYNLTARPIID 86  human
CAC33801   13 DNVKVVVRCRPLNERERamsSKMAVGVDEirGTISVHKVds------mnEPPKTFTFDTVFGPDSNQLDVYNLTARPIID 86  African clawed frog
P46872      9 DNVRVVVRCRPLNSKETgqgFKSVVKMDEmrGTVQVTNPnap-----sgEPPKSFTFDTVFAPGAKQTDVYNQTARPIVD 83  purple urchin
P46869      9 ESVKVVVRCRPLNGKEKadgRSRIVDMDVdaGQVKVRNPkad-----asEPPKAFTFDQVYDWNCQQRDVFDITARPLID 83  Chlamydomonas rein...
NP_523934  19 ENVRVVVRTRPMDKNELsagALSAISVDKinRAITVMKPnat-----anEPPKTYYFDNVFDGGSNQMDLYVDTARPIVD 93  fruit fly
AAQ03216    4 ETVKVMVRARPMNKLEIskgCANIVQVDPqtNQIILSNGkd-------aEAAKVFTYDYVFPPDIQQQTVYENSAFPLVE 76  Tetrahymena thermo...
CAB51556   12 ECVKVVVRCRPLNSKEKedgRTQVVFVNQsrGEISVTNPkgd-----saEAPKVFTFDSTFEPEVEQETVYKNTAYPIVE 86  Tetrahymena thermo...
O15066      8 ESVRVVVRCRPMNGKEKaasYDKVVDVDVklGQVSVKNPkgt-----ahEMPKTFTFDAVYDWNAKQFELYDETFRPLVD 82  human
2VVG_A      4 DNIKVIVRCRPLNARETrenALNIIRMDEasAQVIVDPPeqeksatqakKVPRTFTFDAVYDQTSCNYGIFQASFKPLID 83  Giardia intestinalis
3B6V_A     21 EALKVVARCRPLSRKEEaagHEQILTMDVklGQVTLRNPraa-----pgELPKTFTFDAVYDASSKQADLYDETVRPLID 95  human
Feature 1                  #  # ####                                                          
3B6U_A     96 SVLQGFNGTIFAYGQTGTGKTYTMEGIrgdpekRGVIPNSFDHIFTHISRsqn-qqYLVRASYLEIYQEEIRDLLSKDqt 174 human
NP_008985  87 SVLEGYNGTIFAYGQTGTGKTFTMEGVraipelRGIIPNSFAHIFGHIAKaegdtrFLVRVSYLEIYNEEVRDLLGKDqt 166 human
CAC33801   87 SVLEGYNGTIFAYGQTGTGKTFTMEGVrtvpelRGIIPNSFAHVFGHIAKaegdtrFLVRVSYLEIYNEEVRDLLGKDqn 166 African clawed frog
P46872     84 AIIEGYNGTIFAYGQTGTGKTFTMEGVrsqpelRGIIPNSFAHIFGHIAKeqenvrFLVRVSYLEIYNEEVKDLLGKDqq 163 purple urchin
P46869     84 SCIEGYNGTIFAYGQTGTGKSHTMEGKdeppelRGLIPNTFRYVFEIIARdsgtkeFLVRSSYLEIYNEEVRDLLGKDhs 163 Chlamydomonas rein...
NP_523934  94 KVLEGYNGTILAYGQTGTGKTYTMSGNpdspqtKGIIPNAFAHIFGHIAKakenqkFLVRVSYMEIYNEEVRDLLGKDvg 173 fruit fly
AAQ03216   77 SVVEGYNGTIFAYGQTGCGKTHSMLGKpndeveKGIIPRTFSHIINIVESand-knFLVRCSYIEIYNEEIHDLLGKDak 155 Tetrahymena thermo...
CAB51556   87 SVLEGYNGTIFAYGQTGTGKTHTMEGKdepkhlRGIIPRTFDHIFRSIKGtpn-vqFLVRVSFLELYNEEIRDLLQKNi- 164 Tetrahymena thermo...
O15066     83 SVLQGFNGTIFAYGQTGTGKTYTMEGIrgdpekRGVIPNSFDHIFTHISRsqn-qqYLVRASYLEIYQEEIRDLLSKDqt 161 human
2VVG_A     84 AVLEGFNSTIFAYGQTGAGKTWTMGGNke---ePGAIPNSFKHLFDAINSsssnqnFLVIGSYLELYNEEIRDLIKNNt- 159 Giardia intestinalis
3B6V_A     96 SVLQGFNGTVFAYGQTGTGKTYTMQGTwvepelRGVIPNAFEHIFTHISRsqn-qqYLVRASYLEIYQEEIRDLLSKEpg 174 human
Feature 1                                                                                     
3B6U_A    175 kRLELKERPdtGVYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSevgl----------- 243 human
NP_008985 167 qRLEVKERPdvGVYIKDLSAYVVNNADDMDRIMTLGHKNRSVGATNMNEHSSRSHAIFTITIECSekgi----------- 235 human
CAC33801  167 qRLEVKERPdvGVYIKDLSGYVVNNADDMDRIMTLGHKNRSVGATNMNEHSSRSHAIFTITIECSekga----------- 235 African clawed frog
P46872    164 hRLEVKERPdvGVYVKDLSAFVVNNADDMDRIMTLGNKNRSVGATNMNESSSRSHAIFTITLERSdmgl----------- 232 purple urchin
P46869    164 kKMELKESPdrGVYVKDLSQFVCKNYEEMNKVLLAGKDNRQVGATLMNQDSSRSHSIFTITIECIeklesaaaqkpgakk 243 Chlamydomonas rein...
NP_523934 174 kSLEVKERPdiGVFVKDLSGYVVHNADDLENIMRLGNKNRAVGATKMNQESSRSHAIFSITVERSelge----------- 242 fruit fly
AAQ03216  156 aRMDLKEYPdkGVFVKDLTMNVVKTVAEMEKWMNIGTENRSVGATAMNKDSSRSHSIFTLYIECSykveg---------- 225 Tetrahymena thermo...
CAB51556  165 kKLELREKPgsGVYVKDLSTFMIQDQEELREKLLHGRENRAVGATQMNQDSSRSHSIFGITIERCdivn----------- 233 Tetrahymena thermo...
O15066    162 kRLELKERPdtGVYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSevgl----------- 230 human
2VVG_A    160 -KLPLKEDKtrGIYVDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSevie----------- 227 Giardia intestinalis
3B6V_A    175 kRLELKENPetGVYIKDLSSFVTKNVKEIEHVMNLGNQTRAVGSTHMNEVSSRSHAIFIITVECSergs----------- 243 human
Feature 1                   #                                                                 
3B6U_A    244 dgenHIRVGKLNLVDLAGSERqakt------------------------gaqGERLKEATKINLSLSALGNVISALVDGK 299 human
NP_008985 236 dgnmHVRMGKLHLVDLAGSERqakt------------------------gatGQRLKEATKINLSLSTLGNVISALVDGK 291 human
CAC33801  236 dgniHVRMGKLHLVDLAGSERqakt------------------------gatGQRLKEATKINLSLSTLGNVISALVDGK 291 African clawed frog
P46872    233 dkeqHVRVGKLHMVDLAGSERqtkt------------------------gatGQRLKEATKINLSLSTLGNVISSLVDGK 288 purple urchin
P46869    244 ddsnHVRVGKLNLVDLAGSERqdkt------------------------gatGDRLKEGIKINLSLTALGNVISALVDGK 299 Chlamydomonas rein...
NP_523934 243 gdvqHVRMGKLQLVDLAGSERqskt------------------------qasGQRLKEATKINLSLSVLGNVISALVDGK 298 fruit fly
AAQ03216  226 dtedHITAGKLNLVDLAGSERqskt------------------------qatGDRLKEATKINLSLSALGNVISALVDGK 281 Tetrahymena thermo...
CAB51556  234 -gesHIRVGKLNLVDLAGSERqskt------------------------qatGSRLKEAININQSLTTLGNVISSLIDPK 288 Tetrahymena thermo...
O15066    231 dgenHIRVGKLNLVDLAGSERqakt------------------------gaqGERLKEATKINLSLSALGNVISALVDGK 286 human
2VVG_A    228 -nkeVIRVGKLNLVDLAGSERqskt------------------------gatGETLVEGAKINLSLSALGLVISKLVEGA 282 Giardia intestinalis
3B6V_A    244 dgqdHIRVGKLNLVDLAGSERqnkagpntaggaatpssggggggggsgggagGERPKEASKINLSLSALGNVIAALAGNR 323 human
Feature 1                                                           
3B6U_A    300 StHIPYRDSKLTRLLQDSLGGNAKTVMVANVGPASyNVEETLTTLRYANRAKNI 353 human
NP_008985 292 StHVPYRNSKLTRLLQDSLGGNSKTMMCANIGPADyNYDETISTLRYANRAKNI 345 human
CAC33801  292 StHVPYRNSKLTRLLQDSLGGNSKTMMCANIGPADyNYDETISTLRYANRAKNI 345 African clawed frog
P46872    289 StHIPYRNSKLTRLLQDSLGGNAKTVMCANIGPAEyNYDETISTLRYANRAKNI 342 purple urchin
P46869    300 SgHIPYRDSKLTRLLQDSLGGNTKTVMVANIGPADwNYDETMSTLRYANRAKNI 353 Chlamydomonas reinhardtii
NP_523934 299 StHIPYRNSKLTRLLQDSLGGNSKTVMCATISPADsNYMETISTLRYASRAKNI 352 fruit fly
AAQ03216  282 SqHVPYRDSKLTRLLQDSLGGNTKTIMIAAISPADyNYEETLSTLRYASRAKNI 335 Tetrahymena thermophila
CAB51556  289 AtHVPYRDSKLTRLLQDSLGGNTKTVMVANVGPAD-FTMMNYSTLRYAHRAKSI 341 Tetrahymena thermophila
O15066    287 StHIPYRDSKLTRLLQDSLGGNAKTVMVANVGPASyNVEETLTTLRYANRAKNI 340 human
2VVG_A    283 T-HIPYRDSKLTRLLQDSLGGNSKTLMCANISPAStNYDETMSTLRYADRAKQI 335 Giardia intestinalis
3B6V_A    324 StHIPYRDSKLTRLLQDSLGGNAKTIMVATLGPAShSYDESLSTLRFANRAKNI 377 human

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