1UB0,1JXI


Conserved Protein Domain Family
HMPP_kinase

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cd01169: HMPP_kinase 
Click on image for an interactive view with Cn3D
4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1. The first step is the phosphorylation of the hydroxyl group of HMP to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate (HMP-P) and then the phophorylation of HMP-P to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine pyrophosphate (HMP-PP), which is the substrate for the thiamine synthase coupling reaction.
Statistics
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PSSM-Id: 238574
Aligned: 138 rows
Threshold Bit Score: 165.754
Created: 10-Jan-2006
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 5 residues -Click on image for an interactive view with Cn3D
Feature 1:substrate binding site [chemical binding site]
Evidence:
  • Structure:1JXI; HMPP kinase with bound substrate HMP

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1             #           #                    #                                      # 
1UB0_A        3 VALTIAGSDSGgGAGVQADLKVFFRFGVYGTSALTLVTAQNtlgvQRVHLLPPEVVYAQIESVAqd---fpLHAAKTGAL 79  Thermus thermoph...
1JXI_A       27 NALTIAGTDPSgGAGIQADLKTFSALGAYGCSVITALVAENtcgvQSVYRIEPDFVAAQLDSVFsd---vrIDTTKIGML 103 Salmonella typhi...
NP_106388     8 HVLVVGGSDSSgGAGIARDIETVSAFGVRSCLAITAVTVQThsavEHVKLVPSELVAAQMRAAFaa---naVAAVKIGMI 84  Mesorhizobium lo...
NP_422017     8 RVLVIAGSDSGgGAGIQADIKTITALGGYAATAITAVTVQNtlgvTGVHPIPLDVIAAQARAVLdd---igADAIKTGML 84  Caulobacter cres...
ZP_00055350   4 RVLIIAGSDSGgGAGIQADIKAVTCLGGYAATAVTALTAQNtlgvTGIHEVPPEFVWAQMEAVLgd---igADCIKTGML 80  Magnetospirillum...
XP_306086     5 RVLIVAGSDSGgGAGIQADIKTVSAFGGFAMTAITAVTAQNtcgvSAITYLSPGMVADQMRAVLdd---igADIIKIGML 81  Anopheles gambia...
CAE09901      3 VVLTIAGSDSSgGAGIQADIKTAEAFGCFSATALTVITAQNtlgvREAMPLGASLVRSQIEAVMed---fsVEAIKIGML 79  Wolinella succin...
ZP_00197445   6 HVLVVAGSDSSgGAGNGRDIEVLASLGVNAALAITAVTAQThsrvAAVEPMSPSLVSAQMEAALea---epIDAIKIGML 82  Mesorhizobium sp...
ZP_00288590   4 CVLTIAGSDPCaGAGLQADLKTITALGGYGATVVTAITVQNsvkvSQVHPVEGSLVAAQMRAVLsd---lpIKAIKLGML 80  Magnetococcus sp...
ZP_00318084   5 AILSIAASDSFgAAGIQADIKTAMALHAYCATAITAVTAQNslgvAAIHPVPANILSAQFTAAAqgflparLGAIKIGML 84  Microbulbifer de...
Feature 1                                                                                       
1UB0_A       80 gdAAIVEAVAEAVRrf-gvRPLVVDPVMvaksgdpllAKEAAAALKerlfplADLVTPNRLEAEALLgrpirtlkeaee- 157 Thermus thermoph...
1JXI_A      104 aeTDIVEAVAERLQrh-hvRNVVLDTVMlaksgdpllSPSAIETLRvrllpqVSLITPNLPEAAALLdapharteqemla 182 Salmonella typhi...
NP_106388    85 gtSAAVEAVGAVLVnr--qVPVVLDPVLastsgrnllADDAINMLRhdlmpiCRLVTPNLVELAAFTgsspaadeegacr 162 Mesorhizobium lo...
NP_422017    85 gdAAVVEIVAQALDha-ggVPAVVDPVMvakggapllAEAAIGAVKslmiprAFLLTPNAPEAAALTglvvettedlrr- 162 Caulobacter cres...
ZP_00055350  81 asAAIVEVVAVALEelapeVPLVLDPVMvakggaallADSAAGELVkrlvprARLLTPNIPEAEVMLgrtiagvedler- 159 Magnetospirillum...
XP_306086    82 gnAEIMEAVWETLEry-ptIRCVIDPVMiatsgarlmTEDGEAPFRrly-ahCFMLTPNLPELEILSgralttpmemqaa 159 Anopheles gambia...
CAE09901     80 ydTETILGVGEFLIqnalkIPVVLDPVAisqagskllLDEAIRSLAdlf-plATVVTPNLKETELFWnldqeptleilre 158 Wolinella succin...
ZP_00197445  83 gtSDIVEAVSTVLRrh-lpIPVVLDPVLasssggrlmEEAGIAVLKrellplCRLVTPNWLELAILAatvtagseeeald 161 Mesorhizobium sp...
ZP_00288590  81 gnRGVVEAVLSVLDhy-peIPVVADTVLrgsaggallADEDVAHFVqhllprCHLITPNLDEAQRLTgleggvgvadles 159 Magnetococcus sp...
ZP_00318084  85 ghAEALPAVVSFVQqlagaIPVVVDTVLnassgavllPPSAVRAYResllplATLITPNLHEAALLLdaplatseaqqre 164 Microbulbifer de...
Feature 1                                                              #                        
1UB0_A      158 aakallalgpkAVLLKGGhleg-eeaVDLLAtr-ggVLRFSAPRvh-trNTHGTGCTLSAAIAALLAKgrpLAEAVAEAK 234 Thermus thermoph...
1JXI_A      183 qgrallamgceAVLMKGGhled-aqsPDWLFtr-egEQRFSAPRvn-tkNTHGTGCTLSAALAALRPRhrsWGETVNEAK 259 Salmonella typhi...
NP_106388   163 qaeelsrtvrtAVLVKGGhaqg-trcVDVLLqp-nqPAVRFEAPrl-prGMRGTGCMMASAVAASLALgasLEASVRQGK 239 Mesorhizobium lo...
NP_422017   163 ageallalgarAVLMKGGhvag-ervVDVLMtp-agETTFEGERid-trHTHGTGCTLASACAAGLAKglkLEEAVAQAW 239 Caulobacter cres...
ZP_00055350 160 aaldlldlgpqAVLLKGGhleg-ddlVDVLAea-ggIRRFTGRRiq-trSTHGTGCTLASSIAAGLAQgmeLGDAVERAR 236 Magnetospirillum...
XP_306086   160 aaevmrqhglaWVLAKGGhlpg-dnvVDILLse-qqEQRFEDRKie-tsHTHGTGCTLASAIAICLAQgevVERAVERSR 236 Anopheles gambia...
CAE09901    159 rgvefarergvAFVVKNLrke--drsVDYLIqe-egIASFCTPYvk-ngQSHGTGCSFSMAIACLLALglsLPEAVKEAK 234 Wolinella succin...
ZP_00197445 162 qgnlllasgchALLVKGGhapdkrnsTDILLrrghaPERFEAPRld--sRMRGTGCALASSIAAALARglsLEESIAFGK 239 Mesorhizobium sp...
ZP_00288590 160 layrlmglgcgGVVLTGGhlvg-nkvVDTLVck-ggIKRWIGEKiaskeGFHGTGCTLASAVALGVAKgldDFEAVEEGI 237 Magnetococcus sp...
ZP_00318084 165 qaqallqlgcgAVLLKGGhfeg-nsaSDYLVtp-hgEARFSSSKiq-tnNSRGTGCSLAAAIAVGIAQgqpLEQAVEAAK 241 Microbulbifer de...
Feature 1                 
1UB0_A      235 AYLTRALKTA 244 Thermus thermophilus
1JXI_A      260 AWLSAALAQA 269 Salmonella typhimurium
NP_106388   240 QYVFDALAGS 249 Mesorhizobium loti MAFF303099
NP_422017   240 NYVHEAMLRA 249 Caulobacter crescentus CB15
ZP_00055350 237 AYLMRAIETA 246 Magnetospirillum magnetotacticum
XP_306086   237 AYVRRAILQA 246 Anopheles gambiae str. PEST
CAE09901    235 DYIYKAMLEA 244 Wolinella succinogenes
ZP_00197445 240 RKVYHLLREA 249 Mesorhizobium sp. BNC1
ZP_00288590 238 AYVRQTIRRS 247 Magnetococcus sp. MC-1
ZP_00318084 242 NYISAALQGA 251 Microbulbifer degradans 2-40

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