Conserved Protein Domain Family
partition_RepB

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TIGR03454: partition_RepB 
plasmid partitioning protein RepB
Members of this family are the RepB protein involved in replicon partitioning. RepB is found, in general, as part of a repABC operon in plasmids and small chromosomes, separate from the main chromosome, in various bacteria. This model describes a rather narrow clade of proteins; it should be noted that additional homologs scoring below the trusted cutoff have very similar functions, although they may be named differently. [Mobile and extrachromosomal element functions, Plasmid functions]
Statistics
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PSSM-Id: 274586
Aligned: 17 rows
Threshold Bit Score: 303.867
Created: 9-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_010976299   5 NRKNELRALFSAgapaadpqtpaeTA-------S-GE-----LTPVNARPAapldaPRAASGAVKAMGLSLGSITREAEE 71  Sinorhizobium m...
WP_010915938   2 SRRDVLNGIFAD------------TT-------R-EL-----AAANFSKEAd---gGRVLAGPVRTMGLALDRMDQ---E 50  Mesorhizobium loti
WP_011251432   2 ARKHNLGSLVSA------------QSsapsktqA-PS-----PTSLSGSYR--------SSGALGSVAKSLGSLRQKADE 55  Gluconobacter o...
WP_011427626   2 ARKNLLSGLMDD------------SKkftavnnE-DE-----PAPRDERQHi----TYKGIGALGAVTRSIDALAAKADA 59  Rhizobium etli
WP_011427465   2 SRKDSIDSLFLK------------KP-------V-AT-----AS-SASKSS-----DRVRTGAISAMGSSLHEMAENAKQ 50  Rhizobium etli
WP_010916133   2 ARKDIFGSVMGP------------------------------VAAVADNKDv---sGYAVRGASRSIMQSFEELSK---- 44  Mesorhizobium loti
WP_011331264   2 SRKNILQGLMAG------------TP-------S-PA-----PAAAE---R-----PRATKGAIGAVSRSIADLKARA-- 46  Rhodobacter sph...
WP_010968236   2 SRKDSKGLFANV------------LG-------QlEN-----SAEKGGMQR----------STSPHLLKVAAGVRQMQER 47  Sinorhizobium m...
WP_012753834   5 ARRHLLDIDDEI------------AA-------A-SGegagaTEPALAIDR-----QPRRVGAVRDMDLSIGLLEREAAE 59  Methylobacteriu...
WP_011331444   4 SKKKRMSMLDSL------------AA-------A-G--------------------TPPAPGSMMSSNRALRSARD---- 39  Rhodobacter sph...
WP_010976299  72 ARVLREALTQGERVVSLDPALVESSFVEDRLtdgEI--D-DADFLALVESIRENGQQSPILVRPHPEKQGHYQTAYGHRR 148 Sinorhizobium m...
WP_010915938  51 ARELREALKSGERVVELDPELIDGSFVRDRL---DG--E-VPATDDIVRSIEENGQEVPILVRQHPDLEGRYQVAYGHRR 124 Mesorhizobium loti
WP_011251432  56 AAELEILLKTGATIIELSPDLVETSFVSDRM---PG--N-EEAYLKLRDAIKSTGQLSPILVRPHPTKAGHYQTAYGHRR 129 Gluconobacter o...
WP_011427626  60 AKAIEEQLASGETVIDLDPALIEDSFVTDRL---AH--T-DEQFRELVEAIRLRGQDSPILVRPHPEREGRYQIAFGHRR 133 Rhizobium etli
WP_011427465  51 ASKLQQQLAEGEAVISIETASIDTSKIVDRI---PI--DvDPAFDALVESIAEHGQQVPILVRPNPQASGRFQIAYGRRR 125 Rhizobium etli
WP_010916133  45 -----------SSVVDLDPALVDTSFVSDRL---DE--D-DQAYQELLSAIRERGQDSPILVRPHPEVSGRFQTVFGHRR 107 Mesorhizobium loti
WP_011331264  47 -------------VIEVDPFLIDAGGLQDRL---ES--D-AAEDAELARSIATYGQQVPVLVRPHPTDENRFQIVYGRRR 107 Rhodobacter sph...
WP_010968236  48 SELAERLLKDGGQIVEIDPDEIMESAIRDRF---DSgyS-EAGIADLLESMREHGQSTPGLVRPVRGAARPFQIVFGRRR 123 Sinorhizobium m...
WP_012753834  60 LEQIKALLASGGSVVELDTELVDPSAFRERL---------DYDVSDLSKAIEARGQIVPILVRPHPEAKGRYQIAYGNRR 130 Methylobacteriu...
WP_011331444  40 -------AVDAHHVWELDPVEIQDERYSDRL-------D-PKDVHDLRASIEQNGQTVPILVRRHPTETDRYLLVYGRRR 104 Rhodobacter sph...
WP_010976299 149 LKAVRRLEL--QVKAIVRTLTDDEVVLAQGKENAERRNLSFIERALFAAALVARGFDRKVIGDA-LAVQKSELSRLLQVA 225 Sinorhizobium m...
WP_010915938 125 LRAVRLLGR--KVRAVVRRLSDNELVVAQGIENTARKDLSYIERAVFALSLETHGFGRDLIMQA-LSTEKTELSKLLSVA 201 Mesorhizobium loti
WP_011251432 130 LRACRELGL--SVKAAVKELSDHDLIIAQGQENSARADLSFIERATFARRLLERGYERATIMTA-LSTDKTTLSRMLSVS 206 Gluconobacter o...
WP_011427626 134 ARAAKELGR--PVRAVVKRLDDRDHVIAQGQENSARADLSFIERTMFADKLDTLGFDRETIMSA-LSADKTTVSKMLSVT 210 Rhizobium etli
WP_011427465 126 VKAAEKLGR--PVRAIVRNLSDSQLYIAQGRENLDRKDLSFIEKAFFAKNLEDDGCDRPTIIAA-LVSDKADVSRYVAVA 202 Rhizobium etli
WP_010916133 108 VKVARQLGR--PVRAVVKKMGDEDHVIAQGQENAARANLSFIERTLFADRILKRGHTSDTVKSA-LALDDTTFSKMRSVT 184 Mesorhizobium loti
WP_011331264 108 VLALRDLGQ--PVKALVRDLDDREAVLAQGQENTARRDLSFIEKVNFARQMADAGYDRKAICDA-LSVDKTLISRMVSVS 184 Rhodobacter sph...
WP_010968236 124 LAAAKLLGI--KFKAIARELSDEDAIVLQGEENSNRKDLSFIERCLFAQSQEAAGYRRDVICKS-LSTGRSHISEMIRIA 200 Sinorhizobium m...
WP_012753834 131 HAVCHELGR--PVRAVVKDLSDVEMIVAQGQENAARRDLTFIEQARFVANLKEK-HPAVQVKRE-LGIDESLMHKMVSVV 206 Methylobacteriu...
WP_011331444 105 LEAIRASDKvkKVRALIAILDDTAALRAQVSENTGRRDLSYIERALFAQELLDSGFGSQAQIAEvLNATRSAVSMSISVA 184 Rhodobacter sph...
WP_010976299 226 DGVPHEVARAIGPAPKAGRERWMAIGTLL-ERQEARARAQDEI----------ASPRFRAVDSDQR-------------F 281 Sinorhizobium m...
WP_010915938 202 KGIPGSLVKAIGAAPSMGRRRWMDIAEKI-TDPKAMEVARNAI----------HRPEFEALGSDER-------------F 257 Mesorhizobium loti
WP_011251432 207 EAIPHILIEWLGPCPTIGRPRWQELAESL-KAVPNQTSWEPFI----------EAS--GKTEDVDK-------------F 260 Gluconobacter o...
WP_011427626 211 KRIPAEVLAAIGVAKTTGRDRWHDLSAKF-ETENIAARAIEFT----------RSVEFETAEPDAR-------------F 266 Rhizobium etli
WP_011427465 203 RQVPEELVKLIGPAPKAGRARWMTLVEHL-SSPAKLATAHELV----------AGFAENRLQSDAR-------------L 258 Rhizobium etli
WP_010916133 185 GNIPEPVIVAVGSAKAVGRDRWWQLAKLM-EHPGNAGRAADYV----------KSADFAEPSSDAR-------------F 240 Mesorhizobium loti
WP_011331264 185 ERVPVALIEAIGAASGIGRDRWLALAELM-EKTDDDLDTLIST----------MSLTAEGQGSDQR-------------F 240 Rhodobacter sph...
WP_010968236 201 AALPREILMQIGPAPEIGRRRWIEFEVRWaAHREPAKVAQLVL----------EQEQIQASSSDLR-------------F 257 Sinorhizobium m...
WP_012753834 207 STLPEALIRTIGRAEGIGRPRWLKLTEDV-RKLIDAGTSQDEIvarakaavdaARAKAVELKSHMQ-------------F 272 Methylobacteriu...
WP_011331444 185 KAIGTALAHAIGPAHGIGRPRWESLAKEL-PDAGMDMEELCRV----------ASDARGQAAAREQaegepqvdpsvtaF 253 Rhodobacter sph...
WP_010976299 282 QLVFN-RLSQSGKPEP-------------ERPe-----eLKD--AAGRVFARLKRDGKAPRIEFLPGTHPA-VVQEAVSM 339 Sinorhizobium m...
WP_010915938 258 MMVLA-EVSKKPPREQ-------------TISe------WKP--NGGKVAAKIKDTGRAYTLSLKTAEADEgFGAYLTKR 315 Mesorhizobium loti
WP_011251432 261 SELLD-QVRDQARQARqlekqsikpankaAPGa-----sWVS--TDKALTIDLEAKKRATNLVFKSADASE-FASFVMTA 331 Gluconobacter o...
WP_011427626 267 DMLVA-FISRNQQASP-------------AAAvqpvahaWQR--RDGAVKAKIKDDGKQFTIALKAEKASA-FGAYIASN 329 Rhizobium etli
WP_011427465 259 DALLR-ALSEPSKKSR-------------ANRtd----vWKT--PLGKRAARVEAREGKTSITFEEKVVPA-FGQFVSAK 317 Rhizobium etli
WP_010916133 241 ALLFD-YLNAPAKRSP-------------AAPktr-ekaWAP--QDRSVRAKITDTGKVFTLALKAREASP-FGAFITER 302 Mesorhizobium loti
WP_011331264 241 EALFS-YLSGQRRREP-------------PAPlrt--epITG--HDGRPLGDVSRGAASVVLRLRRSHAKG-FEEWLLQN 301 Rhodobacter sph...
WP_010968236 258 TAVFE-ALTKVDVRAA-------------ASSt-----sDLI--SHGLVLGQIQRGKSAAKLTFNKSVPSG-FVDFIAGQ 315 Sinorhizobium m...
WP_012753834 273 EAIFAeFVRGDPKPVIe----------------------LSA--EDGKSLGKVVRTATGSNLKLSDQ---G-FVDHLLEM 324 Methylobacteriu...
WP_011331444 254 EAVVR-YVRKTNGNSP-------------AKKp-----rPKPllIEGAPAGAIKRSARALRLELTDVDD-A-FAQWLDAN 312 Rhodobacter sph...
WP_010976299 340 ----LANWHAAFVE 349 Sinorhizobium meliloti
WP_010915938 316 ----LDDLYADWQA 325 Mesorhizobium loti
WP_011251432 332 ----IPDLYERFKA 341 Gluconobacter oxydans
WP_011427626 330 ----LDRLYEAFEK 339 Rhizobium etli
WP_011427465 318 ----LDQLYKEFQE 327 Rhizobium etli
WP_010916133 303 ----LDELFEAFRQ 312 Mesorhizobium loti
WP_011331264 302 ----LPDLHRSWQS 311 Rhodobacter sphaeroides
WP_010968236 316 ----IESLHDQFMQ 325 Sinorhizobium meliloti
WP_012753834 325 ----LPELHRLYRE 334 Methylobacterium extorquens
WP_011331444 313 aqdvLDQLHDRWRR 326 Rhodobacter sphaeroides
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