5DGK


Conserved Protein Domain Family
HTH_56

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pfam18662: HTH_56 
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Cch helix turn helix domain
Staphylococcal Cassette Chromosome, or SCC elements, are a family of genomic islands found in S. aureus and closely related species. SCC elements that carry the mecA gene are called SCCmec and render S. aureus methicillin-resistant, creating the MRSA strains. Cch, the self-loading helicase encoded by SCCmec type IV, belongs to the pre-sensor II insert clade of AAA+ ATPases, as do the archaeal and eukaryotic MCM-family replicative helicases. The N-terminal domain carries pfam06048. The central domain (residues 157-438) contains an AAA+ ATPase fold. This domain is found at the C-terminal region, it is a winged helix-turn-helix (WH) domain typical of many dsDNA-binding proteins.
Statistics
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PSSM-Id: 436653
Aligned: 33 rows
Threshold Bit Score: 75.8156
Created: 27-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
5DGK_A          439 SLADKAIDVIIQFVAQNRGKFSDEGAL-K-NXF-----ENYGLISLKDDHIE---------VKIIANVFKQXLNNHQFQD 502
EOS42195        447 DIGQRALSYLMQYISEHYSQFCIEGDSaDfVPK-----DCAGRITKVCPSTLidgtpyskrLYITNIKLTSILHAGQFPD 521
EMZ23347        440 DIGIKAYEAVMSYVAERPKEFGEAIYSnD-PRAdveyyYRSGKIKPSKQKKLydgslsneiLFIKEETFDKILESKGFRD 518
CDC21044        737 DVNENAKQFVVDWILSNKDNFGLNARS-----------NCLGFINDDK-------------AYILPTLLKKALKDNGF-S 791
CDB95082        734 DVNENALQYIIDWILSNKEQFTEYAKGaK-----------YGFEKMGK-------------YYIIPSVLSEALKRVGY-T 788
WP_054261234    734 DYAQKALDFTLGWIASNSEYFKDNGSTt----------QQYGFFKPSGE------------CCIVPEVFKDALRKAGL-S 790 Propionispor...
KKI51795        496 SAHERSYEQLCEYVIQNRHRFKESNNY-----D-----AVWGKFNETETM-----------AYVVKREYDRICADEGF-N 553
KUCSBL:ELI_1277 516 SENERCYEFIQGEIVRNNHRFKQEGDE-F-FPT-----ECWGVREKNY-------------TYIIKNVFDQMCRDCNY-N 574
KJJ77635        507 SDNERCYQFILDKVAMNPARFDNKVENv----------EKWGTIENGY-------------VIIYTTAFTALCKDGGF-S 562
jgi:Cphy_2984   502 SEEERAYDFIMSDIQVHRNNFESDRFTg----------EIWGAIDKGY-------------AIIHNNIFNSMCERGNF-S 557
5DGK_A          503 VNNVVNALRDKGFILADR-GRQTTKRSV-KDNsgKkqSlVFYHLKLDVE 549
EOS42195        522 IKVILKRWKEEGILKSEK-DRYISDIQI-VKEmpK--V-KGYMINMPEQ 565
EMZ23347        519 SKVILRKLRELGLLVSDN-DRFKSKARL-GQDsiL--I-KGYRLRIRNC 562
CDC21044        792 ARKSMNYFAEKGIITSKK-YDTQKTYSI-TKRfnGrsC-RFVEFHLNCN 837
CDB95082        789 KTKTLRFLYEKGIISK---DGDNGSYTV-REYmdTkrS-RFIEFDFEKA 832
WP_054261234    791 VSLVLKEFAERGWIETETaGSGKATYSV-RCYwkN--S-RVRMIVFTSC 835 Propionispora sp. 2/2-37
KKI51795        554 GKALLSWMTRNGKAERSK-DKLTKKARIn-----GqsI-ETVALNLPRE 595
KUCSBL:ELI_1277 575 GTAFLKWADLKGLIQCNE-GRKTKKKKIn-----GasA-WTVCLKNMQE 616
KJJ77635        563 RASFLSWANRKGLLQAEA---SGKKMDK-LKSigGnkV-RCVFLKLNDN 606
jgi:Cphy_2984   558 GKSFLTWADRNGLLI----KDDKGGKNFkNKKfqGksI-RCIFLRMDSE 601
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