1G2R


Conserved Protein Domain Family
YlxR

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cd00279: YlxR 
Click on image for an interactive view with Cn3D
Ylxr homologs; group of conserved hypothetical bacterial proteins of unknown function; structure revealed putative RNA binding cleft; proteins are encoded by an operon that includes other proteins involved in transcription and/or translation
Statistics
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PSSM-Id: 238173
Aligned: 16 rows
Threshold Bit Score: 78.9115
Created: 25-Jan-2002
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
Conserved Features/SitesClick to see Conserved Features Help
 
putative RNA
Conserved site includes 3 residues -Click on image for an interactive view with Cn3D
Feature 1:putative RNA binding cleft [nucleic acid binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1       #               #                       #                                     
1G2R_A     10 PLRKSVVSNEVIDKrDLLRIVKNk-eGQVFIDptgKANGRGAYIKLDnaeALEAKKKkVFNRSFSMeve--esFYDELIA 86  Streptococcus pneu...
418461      8 PLRKCVVTGEMKPKkELIRVVRSk-eGEISVDptgKKNGRGAYLTLDkecILAAKKKnTLQNQFQSqid--dqIFDELLE 84  Bacillus subtilis
16803363    7 PLRKCIITGERLPKgELLRIAYSk-dGALTIDptgKAPGRGFYIVKSveaCEKAKKKnAIFHQLKMpeq--esFYDELIA 83  Listeria monocytog...
15614978    7 PLRKCVVTNEMKPKqELIRVVRSp-eGNVFIDptgKQNGRGAYISNNkecFELAKKKdILSKHLNVkvs--ddVYDQLEE 83  Bacillus halodurans
15900466    7 PLRKSVVSNEVIDKrDLLRIVKNk-eGQVFIDptgKANGRGAYIKLDnaeALEAKKKkVFNRSFSMeve--esFYDELIA 83  Streptococcus pneu...
18145351    7 PMRMCNGCMEMKPKkELIRIVKNa-eGEVSVDltgKKSGRGAYICKSvecLEKAFKAkRLNKNLQSnig--deVYDRLRD 83  Clostridium perfri...
15672747    7 PMRKSLVSNEQFPKkDLLRIAYNk-eGEISIDpsgKAHGRGAYIAILnkeAREAKKKrVFDRAFQTkia--deFYDELIT 83  Lactococcus lactis...
15926850    7 PMRKCILSNEMHPKkDMIRVVVNk-eGEIFADvtgKKQGRGAYVSKDvamVEKAQQKeILEKYFKAskeqldpVYKEIIR 85  Staphylococcus aur...
15828675   13 LTRKCIVTGKIYSVsQLLRFYKFndkVELQLGssnKKIGRGAYVLFEkekIDYLFQKrLLNRSFKKnis--nhEYDYLKE 90  Mycoplasma pulmonis
7801277    11 PERTCVGCRERAVKsELLRTVAVe--GHCTPDprgTLPGRGAYVHPApdcVDQAVRRkAFPRALRVpg---plDVKALRH 85  Streptomyces coeli...
Feature 1       
1G2R_A     87 YV 88  Streptococcus pneumoniae
418461     85 LA 86  Bacillus subtilis
16803363   84 YV 85  Listeria monocytogenes EGD-e
15614978   84 AR 85  Bacillus halodurans
15900466   84 YV 85  Streptococcus pneumoniae TIGR4
18145351   84 EI 85  Clostridium perfringens
15672747   84 YV 85  Lactococcus lactis subsp. lactis
15926850   86 LI 87  Staphylococcus aureus subsp. aureus N315
15828675   91 QV 92  Mycoplasma pulmonis
7801277    86 YV 87  Streptomyces coelicolor A3(2)

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