Conserved Protein Domain Family
RpoN

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COG1508: RpoN 
DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog [Transcription]
DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog is part of the Pathway/BioSystem: RNA polymerase
Statistics
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PSSM-Id: 441117
Aligned: 604 rows
Threshold Bit Score: 300.839
Created: 9-Feb-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_013579550   2 YL-------------------------QPKLNLRVSQR---Q--VLTPGLVQMVSVLALNKLELKDMINSEMVENPVLEE 51 
NP_973003      1 -Ml-----------------------lKQRQQQILSQK---M--VMNQQMLNAVAMLNLSSEELQEEVIKEVKRNPALVF 51 
WP_009014609  22 AM-------------------------PLSMTLEPVQK---Q--QLTQHLIQQMNLLQMTSEELDAFVAREVEQNPLLDF 71 
WP_045929742   1 -M-------------------------KLEMVPQLHMQ---Q--TLSQRLQQSAQILQLSVQELQTLVQDSLQDNPLLEP 49 
WP_050725674   1 -M---------------------------SIELESKVRldlL--PPGPAPSPRIDLLRLSRRELASRIRDEVERNPLLEE 50 
WP_082726129   1 -MagllrgdsvpgtvqllpnerdmtrpGTSLHLNAVQQ---Q--RLSLGQLRMLHLLALPLEELERHIDRLAMENPLLEA 74 
WP_077734767   1 -M-------------------------TLTLQHRLQTQ---Q--QLSPRLQQSNQILQLAAPAFQHLLRSHLDHNPFLHE 49 
WP_106054799   1 -Msg----------------------nQQTLSTTLRQE---Q--QLSARQLQSLELLNLPLLELEERLMQAMAANPLLEA 52 
WP_120175864   1 -M-------------------------SALLEVRQSQQ---LstALSVAQQASLKLLQMTSVELMAEADLLVAQNPFLET 51 
WP_123041507   6 GL-------------------------GYGMLQRQNGQ---M--RLSPRMQQAVRILQLPSSELEEMIRDELERNPVLEV 55 
WP_013579550  52 L-EesaasldertgiegdrersaeavadekvreekdpfdeidfgsyfqdyldpgyktasnfeefdkpsFEH-FLSQPSTL 129
NP_973003     52 K-Tssrvsaasa-----------------------------------------------eegdkhqsfLESiEDDSRKTL 83 
WP_009014609  72 P-Eeretwreegpewrrm-----------------------------------hlrardpsddppsspVEN-AHALEMTL 114
WP_045929742  50 G-Pepappapvreglsh-----------------------------------------pvssesahfadnydTSKAIRSR 87 
WP_050725674  51 R-Tntleqdrhdavrelssierfaaqeda---------------aareplsdpdwedgveelaeellssEG-DPEQELSL 113
WP_082726129  75 EvRpgeqhglga------------------------------------------------wasfdgeeVGR-LPAPALSW 105
WP_077734767  50 A-Deeeteeihiqdavath----------------------------------aesypsvsvpddldpLa--NIEQTEDL 92 
WP_106054799  53 E-Saddlpepeppapaeaedeanfdaeaae------------adewrddlplpsdncardddaerreyLLN-SLTDAPTL 118
WP_120175864  52 E-Naapeasvrteepscdvpegdlp---------------------egaplegmystwgagaayegadPLE-GLVAPESV 108
WP_123041507  56 V-Dgsmgigvgig----------------------------------------------kgkpsdfdpLKNvAASPSPTL 88 
WP_013579550 130 SDHLLWQLGSLT-LKPDVRGAAELIVGNLDMNGYLT------ASEEELAEALGealraqvlpepipfdrhrvkggvlvee 202
NP_973003     84 QAHLIEQAGESI-TDEYVLDAAMLIIQNLDQNGFYW------VPLEELFAGLLae------------------------- 131
WP_009014609 115 EAFLDDQIGCLS-LSPLEARLAYFIAGTLDPSGYWR------EDPVAVAERFD--------------------------- 160
WP_045929742  88 DEQILDHVRLSR-ASERCKALCALIVNALDDNGYLR------DHFEDLLPAGYe-------------------------- 134
WP_050725674 114 LDHLVTQMRLTS-FSPDEERVSKLILGNLDEDGYFRledvegDPLIAVAGEAE--------------------------- 165
WP_082726129 106 REDLLQQARLLP-VAPSTRRTVQRLILELDDDGLLR------GSVEDLAHEWS--------------------------- 151
WP_077734767  93 QSHLLKLLATTR-PDARQYSLCAFIIDALDENGYLR------KSFTDLLPDYIde------------------------- 140
WP_106054799 119 QEQLLQELALSD-APANLRRVGAEIIGGIDDSGYLR------STVPDIAMSTG--------------------------- 164
WP_120175864 109 RAALLNDALELD-LSEKERSCIRCLVEELDESGLLT------VPLNEAAEEYRav------------------------- 156
WP_123041507  89 QQILEEQLNLTTgVPALLRRMVRYLIGNVDSNGYLA------ISLEQAAIDVK--------------------------- 135
WP_013579550 203 avepgvvqalaaeavggrefkAELKAVKTALEVVHALDPVGVGARDLRECLLLQIDAQ-KH----Eaemmlrrrakyadr 277
NP_973003    132 -------------------kkINHAEIKKALNIVRRFEPIGCACSGFKESLIVQAGILc-E----S-------------- 173
WP_009014609 161 ---------------------ATEEVVLAVLQQVQHLEPCGVAARSLKECLLMQLAQQ-KG----D-------------- 200
WP_045929742 135 --------------------hVPLSEWQAALALVQSLSVPGTGAHSLPEALRLQIQAR-QS----L-------------- 175
WP_050725674 166 ---------------------VGLDVAAGALRKLQQLEPTGVCARDLEECLLLQARAW-GE----D-------------- 205
WP_082726129 152 ---------------------EDARHVAASLALLQGLEPAGVGARTRREALTLQWVRL-HG----Eg------------- 192
WP_077734767 141 --------------------pISVMEWEAALERVQRMAPTGVAARNMQECLRLQVNADiDE----H-------------- 182
WP_106054799 165 ---------------------EPVEVVEKALELVQGFDPPGVGCRDLPECLKLQLRRK-NA----L-------------- 204
WP_120175864 157 -------------------vdASPAEWKRALVALQGLEPAGIAQPSLTEGLVEQVRRR-TEagdvD-------------- 202
WP_123041507 136 ---------------------AKSALAEAALEVLQSFEPTGVGARNLAECLLLQANSR-PD----C-------------- 175
WP_013579550 278 vklraeaeDwgevEvesaaaiderggdvfgTARHIVAQCLGLLQ-----KKDMRELTK-SCGKSPDEVQAAVEFIRTLDP 351
NP_973003    174 -------------Pktheild--iyktiysLCVKIIKEHYEVLVfvsdlKLFIKKLAQkKIDIDLETAEELAGLIDALNP 238
WP_009014609 201 --------T----S----------------LAQKIIEEGLDDLA-----RNRIPQLAS-RFNVTKEAILAARDLIRSLNP 246
WP_045929742 176 --------D----Pvl------------kqRLLKLVSTELPALA-----QGEWAQVQS-RQNLSDADFHQALRELQSLDP 225
WP_050725674 206 --------R----G----------------LVGAIIRKHLPALE-----ARGLRSIAS-DLDAELGEVIVAERIIAEMEP 251
WP_082726129 193 --------D----Pls-------------qIALALL-D-LEPGAs---eRLDPEALAR-RLGVSGAQIRLVLERLRRLSP 241
WP_077734767 183 --------S----Ply-------------kPLLQLIDSGLKLLA-----EGHYERLLK-LLRVDETTLKACCAYLRQLDP 231
WP_106054799 205 --------T----P----------------VLEEILDHHLEEIA-----RNHLPQLAR-TLRISLDELYGCLGELRKLSP 250
WP_120175864 203 --------E----Paa-------------rLLVTLLREHLGDLA-----RADRKTLLK-CAANDAELLEEALGLLRELNP 251
WP_123041507 176 --------P----P----------------LVFLLIRSHLQEIA-----ELNPAEIAR-RLRLNPRELGDAIEIIRSFHP 221
WP_013579550 352 RPGQRYNV--S-ETRLIEPDVAFVKRDDVYVVVMNEEDM--PTLRLNQGYRKMLKQKQtEKEVKDYVKERYKSAIQLLRN 426
NP_973003    239 KPGLAYASkgD-GEKFITPIAEIKREGNEIKIIINDEEV--PALEISPEYEKIKNSG--SKEEKKEASEFLNKAALFMNV 313
WP_009014609 247 KPGTAFSE--AgPVEFLHEDAFVKTTEKGLKITLSTSYG--RTLVINKGYLSILDHSD-RPKVKEYLKKELKRAKELQAL 321
WP_045929742 226 NPGLAYLE--P-MRQAITPDVHVYRDGKHWRVLADPRSL--PRVQVHQEYAATLEQQA-RTQQNRPLHSALTQARWLAES 299
WP_050725674 252 RPARAFLA--D-ESPFILPDVQVHRSGNEWIVTA-DDPL--ARIRISRRYRGSLRR---ESPAADFLRENLHAARALIDS 322
WP_082726129 242 SPVAGAV-----PSPPIRPDLSVWLEDGRVQVEV---YLpgRSLAINPEYRALAGRGDlEEDERAYLRHNLQEARWVLGG 313
WP_077734767 232 KPGRQFSA--T-THQHLVPDVFIYRQNNEWHIVPNFNAF--PKLTINKNYEQLLKEN--KPDKDHPLHQEWQQAQWLIES 304
WP_106054799 251 FPGSALAP--E-HSEFVAPEVEIVKSGDGYAVHSCKGAA--PRLFLAERYLKMLETPDlSGEDRAYLREKLQQARDLMRA 325
WP_120175864 252 RPIA-FDA--E-ATRYVLPDLVVRRANGRWRAFVNPSAR--PNVRLSDLAHER------RAVESTELKPYLEEARRFLQA 319
WP_123041507 222 RPGASFDS--A-VTSYIVPDIRIELIGKEVAVSVLEGAA--PRLYIREDYRSMAKEAEgAPETSAFLSPQLHSAAFLIRC 296
WP_013579550 427 IEQRKNTIVRTCESIVRRQSEFLEH--------GES------SLKPMMIKEVAEEIGVHPSTVSRAVANKYVHTQQGVYE 492
NP_973003    314 LAYRNQTILKVLTALVNFQEAFFLGrpckpsseGESdkmqagYLKPLKQIDIAEIVGLSPSTVSRVSNQKYIRCEWGLFE 393
WP_009014609 322 LKSREDTLAVVLDALATHQERFFRY--------GPG------HKVPLKLADLADDTGFAISTISRALSHKVIACRWGAYP 387
WP_045929742 300 LAMRRSTVCRVAEFIVRHQILFFEL--------GEQ------GLQPLRISDLAKELDLHQSTISRATANKYMSTPFGTLS 365
WP_050725674 323 VEGRQRILVRMVEAIARLRTELFER--------GPS------AAVPLDARDVAAEVGLHPSTVLGAAAGKLVATPNGVLP 388
WP_082726129 314 LRRRQATLRMLSLELFTVQRPFLER--------GLE------ALQPLRRYHLADRLHLHPSTVGRALAGKTAVTPWGVHP 379
WP_077734767 305 VEKRHHTVCEVTRIILERQRLFFDY--------GDE------AIRPLLISDIAAELNLHESTISRATSNKYMSTPNGVFS 370
WP_106054799 326 LELRQSTIVRIAEVIARTQRDFLAE--------GVE------ALHPLTMRQVGEELELHETTISRAVANKYVRTPQGIFP 391
WP_120175864 320 VDARTNTLLRIAEFLVEHQQAFFDE--------GPA------ALRPLRQKDAAEALELSESTVSRTTSGKYLQGPSGTLE 385
WP_123041507 297 VERRRQTLTRVAGAIAEEQAAFIRF--------GPA------RLKPLSRRQLADRLGLHESTVSRATAGKFALTPHGVFE 362
WP_013579550 493 LRFFFSEGVNG---P--E----G---G-DLPLVLLKRKVKKLIEEEDPRKPLTDDHLAAELKAQGINVTRRTVAKYREDL 559
NP_973003    394 IKDLFSPEVS------------G-----GLSKDFVEKAIQEIIESDTEK--KTDTRISQILKERGIDIAVRTVNKYRKEM 454
WP_009014609 388 ADAFLVGTAAKaseE--K----G---T-ETTDEALELALQSLIDDEDKHHPLSDQTLCDKLNAMGIPVARRTVNKYRTKL 457
WP_045929742 366 FRHFFSGELET---D--F----G---G-SCSTALVKEQIRRLIAKEPDHQPLSDVELHQALRQDSVELSKRTVTKYRLQL 432
WP_050725674 389 LASFFAPPLDE-----------Gm-aHvDEVTDELEQEILDLVSSEPPRRPYSDHQLVELLRVRRLEASRPLVSRCRELL 456
WP_082726129 380 FERFFPRSVPR---RfgDps-eGpadQ-AVTSSQVRAWIQRSIAEEDPSHPRTDASLAREMTGSGVALARRTVAKYREEM 454
WP_077734767 371 FRHFFSRDLGM---S--F----G---G-SCSTRMVKAKIKQYIEQESADAPLSDVQIHQRLTREEINIAKRTVTKYRQQL 437
WP_106054799 392 LKFFFSAGFTS---E--D----G---A-ELSNRAVMEKIRELIQKEPPAKPLSDEQLAQMLKAGGIAVARRTVAKYREAL 458
WP_120175864 386 LKALFSNAVAA---T--SdapdGd--E-GLSGARILDEIRALVAAEDPASPLADRDIAEQLTGRGYVVSRRTIAKYREKA 457
WP_123041507 363 LGYFFPIGYGQ---G--N----D---D-TASAESVKEKIRHYVRGETAKKPLSDRQLAELLEREGIPVARRTVAKYREEL 429
WP_013579550 560 QIPSTHQRRVR 570
NP_973003    455 GLPSSYHRN-- 463
WP_009014609 458 GIPGKSARKVW 468
WP_045929742 433 GIPNARERLQR 443
WP_050725674 457 GIPPTSERSRR 467
WP_082726129 455 GIPSSRQRRPL 465
WP_077734767 438 AIPSSRERRQP 448
WP_106054799 459 GIPSSNLRRQH 469
WP_120175864 458 GIPSTRLRRRK 468
WP_123041507 430 GIPSSVKRKPV 440
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