Conserved Protein Domain Family
DUF3892
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pfam13031: DUF3892 
Protein of unknown function (DUF3892)
DUF3892 is related to the truncated RNaseH fold-containing ribosome hibernation factors. Predicted to function as a possible conflict effector domain at the ribosome, based on comparable genome contextual associations with DUF2188, including repeated association with nucleotide-activated effector conflict systems.
Links
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Statistics
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PSSM-Id: 463776
Aligned: 51 rows
Threshold Bit Score: 36.0872
Created: 24-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
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Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
Q04FJ7            11 EIVAVKLfv-dPKGNKRVVAVKlasprvtkdYRISYRASAHDMDQEIKSDISyfyinpsnrkkaNKVKVVSKKnPKKSYV 89  Oenococcus ...
jgi:M301_2722      5 KITCINKp--lSGSHEHITHVGn--------PEVGWIWTVADVVKSIDANQNtfyvldpstgkrANVGVIRPS-NHAPYL 73 
jgi:Caci_7310      5 RMTHKRLa--gGSGHEHIVRLWwtda---anrVG--DNSTAEFVGWIEAKTVaayvqd-sygnrVSVGVVTPQ-FGAKYL 75 
jgi:Acid345_0228  17 RITCTIH----SEDHERIAEVG---------CDDGSRFTESEAIARIENQGDefvvdr-pqghtAKVIVEKTK-EGRKFL 81 
Q89B51            11 RIQCINKtd-rQNPHERIKNVGgv-----npDGSRWKQSVDHTIKEIENGVWefyve---ekrtADVIVAVH--NGHKYI 79  Bradyrhizob...
Q89BB5             6 RVRCINKtd-rMNPHERIESVGge-----ysNGSQWKQSVVQTIRDIESGEWefyve--edglmAGVVVAEH--NGHKYI 75  Bradyrhizob...
EHQ25895           6 QVSCINKrgshYSAHERISHIGgi-----nhDNTRWKLTEDQAIKDIENKQYefyvl--vngrsSDVIVASY--QGCKYL 76 
Q2Y557             6 EVKCINKtd-rPNPHERIRAIGgv-----naDGTNWKLSQQDAIRGIEDGKWsfyvs--vrgqiVNVIIGISR-YGNKYL 76  Nitrosospir...
Q6D347             5 QVLCINKsn-rQSAHERITHIGgk-----npDGASWKLTQQDAISGIESGKWkfyvn--agghsVWVIVAVSA-SGNKYL 75  Pectobacter...
CAN97297           6 RVTCITRtn-lQGAHERIQALGgv-----naDGTRWHRSQADVASDINSGRCdyyveq-pgghrVILVVARSS-TGYVYV 77 

Q04FJ7            90 LTKDSDSEIDNLLKLP 105 Oenococcus oeni PSU-1
jgi:M301_2722     74 RTYADGNWSDNLLSLP 89 
jgi:Caci_7310     76 RTRADGKWTDNLLALP 91 
jgi:Acid345_0228  82 KTEADGEKPNNLLSLP 97 
Q89B51            80 KTKADGIQPDNLLSLP 95  Bradyrhizobium japonicum
Q89BB5            76 KTTADGVQPDNLLSLA 91  Bradyrhizobium japonicum
EHQ25895          77 RTIADGYSPDNLLSLP 92 
Q2Y557            77 KTEADGEQPNNLLSLY 92  Nitrosospira multiformis ATCC 25196
Q6D347            76 KTQNDGEQPNNLLSLP 91  Pectobacterium atrosepticum
CAN97297          78 KTQADGELPNNLLSLP 93
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