3GN5


Conserved Protein Domain Family
CxxCG_CxxCG_HTH

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TIGR03830: CxxCG_CxxCG_HTH 
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putative zinc finger/helix-turn-helix protein, YgiT family
This model describes a family of predicted regulatory proteins with a conserved zinc finger/HTH architecture. The amino-terminal region contains a novel domain, featuring two CXXC motifs and occuring in a number of small bacterial proteins as well as in the present family. The carboxyl-terminal region consists of a helix-turn-helix domain, modeled by pfam01381. The predicted function is DNA binding and transcriptional regulation.
Statistics
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PSSM-Id: 274805
Aligned: 43 rows
Threshold Bit Score: 108.102
Created: 9-Oct-2014
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3GN5_A              5 CPVCHQGEMV-S-GIK-DIPYTFRG-RK--TVLkGIHG--LY--CVHCEESIMNKEESDAFMAQVKAFRASVNAETVAPE 74  Escherichi...
ZP_05471738        13 CENCNKFVDYeV-ILK-EDIYNVRG-EE--IKI-KAKI--PV--CKVCGGELFDIHLEDENLREAYRMYAKKHGLVLPEE 82  Thermotoga...
REF_jgi:Csac_2454   7 CPECKKHVEI-K-VEK-NLVKEYKG-VQ--VNV-EEHA--PH--CSECDTELLVPDIENENLKRLYQRYRELTGLITPEE 75  Caldicellu...
ZP_03737230         6 CPACSSLMEF-K-ELK-KKK-VFKG-LD--IEY---SG--NFfvCPGCSLEAGDAGSAGEVQRAIADAYREKAGLLTGQE 73  Desulfonat...
WP_012062135       11 CLMCMEEHGV-D-TVEvIDEETYKS-KE--VSF-NATY--EY--CANADEYLETEEMIKANSLMMKDAYRKKVGLLTSDE 80  Alkaliphil...
WP_011697930       12 CPTCGSTEII-F-KRG-HHHFLESGlEN--IHLsNADI--WR--CNACGEEIVSIPRSMELMKSIAESILLKPISLSGAE 82  Syntrophob...
WP_011461870        5 CDICQCEQET-QvISK-KESLPVRG-ED--IET-VSDI--RV--CLICGNELFDEELDTKNLERVYQAYRNKHNLLSPLE 74  Desulfitob...
WP_011876424        6 CGNCEKEVL--G-ITK-EDYFEYPV-RN--LVY-KINGkrLF--CPDCGNELFHREYDEANQRAAFDLYRKETGIISPKE 75  Desulfotom...
WP_011550317        3 CESCGGELLE-T-RLD-SYHFDESG-LEdvILV-GVIE--RR--CEKCNEREVVIPRLKELHRTIAKALAAKNSLLTPLE 73  Myxococcus...
WP_012531792        3 CPTCDRSELI-E-SVE-NYHYRECGlEN--ITLsGITV--RK--CPECGVVMPKIRNIEGLHDCIAKFLVKKEERLLAPE 73  Geobacter ...
3GN5_A             75 fIVKVRKKLSLTQKEASEIFGGGVNAFSRYEKGNAQPHPSTIKLLR-V-L----DKHPE-LLNEIR 133 Escherichia coli K-12
ZP_05471738        83 -IKNIRENYGLSQETFARILGIGRATLARYENGSL-PSEAISSLIK-R------SKDPN-FLLSLV 138 Thermotoga naphthophila ...
REF_jgi:Csac_2454  76 -IQKIREKYGLSQRELGQILGWGKMTINRYERGAL-PSKSHSDILK-L-I----LTSEG-FFRKKV 132 Caldicellulosiruptor sac...
ZP_03737230        74 -IRELRDSKGLTQEQLSRALNVGVASIKRWESGMV-QSRSMDGLLR-RqL----KPEPN-PYTGNR 131 Desulfonatronospira thio...
WP_012062135       81 -IINIRAKYGLSQKDFSEILDWGKATITRYENHQV-QDRAHDDVLR-K-I----NSDPK-WFLEML 137 Alkaliphilus metalliredi...
WP_011697930       83 -IRFFRKNLGMKIKEFSQLLGVDRVTVSRWENGHEKPSKSADRLIR-L-TyaveAKVPEaVMEQLR 145 Syntrophobacter fumaroxi...
WP_011461870       75 -IKQIRESIG-SGRTVATLLGWSQATFVRYEGGAIPSASHHEQLLR---L----KNDPS-YLNHLY 130 Desulfitobacterium hafni...
WP_011876424       76 -IKDIREKYELTQREFSYLLGFGEITVSRYERGSL-PTIAQSQIIK-E------SIEPS-KMLILL 131 Desulfotomaculum reducens
WP_011550317       74 -VRFLRKHLGFSQADFAKRINVRSEAVSRWETGAEEFSWHFELLLR-Lmvmlelhernytvksfde 137 Myxococcus xanthus
WP_012531792       74 -IVFLRKSLGWSSSDLAKNLQIDKTQVSKWEHGRVEMSKSNELLFReI-I----ARGKK-IMDYHR 132 Geobacter bemidjiensis
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