Conserved Protein Domain Family
DndB

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pfam14072: DndB 
DNA-sulfur modification-associated
This is family of bacterial proteins likely to be necessary for binding to DNA and recognising the modification sites. Members are found in bacteria, archaea and on viral plasmids, and are typically between 354 and 474 amino acids in length. There is a conserved DGQHR sequence motif.
Statistics
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PSSM-Id: 433694
Aligned: 39 rows
Threshold Bit Score: 190.536
Created: 25-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_012267256      13 YKAITGKFGEVRYFITTLEQS---DAVENIRFADE-IQgsWSFSerVQRKLDEKRAeTEIFSYLAQGg------------ 76  Microcystis
WP_006619836      27 ylgLMCRQGGRQMIQINVPAQ---DLPTLLQARPS-LGndPDSG--KNRPEIKGHA-EEIKDYILQRvqk---------- 89  Arthrospira
jgi:Glo7428_1935  31 YPGLIFRQGKRKMVQINVPAR---DLPILLQAMPS-TDndPDSG--KNRPEVKGHA-EEIKTYVVERaka---------- 93 
jgi:Cal7507_4531  37 YPGLIFKQGKRTMLQINVPAS---DFSGLLQAKPS-TGndPDSG--KNRPEVKGHA-DEIKKYIVDRsrk---------- 99 
WP_015151421      32 YPGLIFRQGKRQMVQINVPAD---DLPTLLQAKPS-SDndPDSG--KNRPEVKGHA-EEIKEYILKRasn---------- 94  Oscillatori...
jgi:PCC7424_4839  32 yigliFEQGKRKMIQINVPAH---DLPTLLQAKPS-TNndPDSG--KNRPVIKGHA-EEVKQYILKRakq---------- 94 
WP_012595682      49 FLCHVYQQGGRSHLVFSLPMNilvELAKLQSAETKkNKsdVEEK--MNRPKIPSHV-NDIAKYLLYTd------------ 113 Rippkaea or...
jgi:Amir_3764     33 lTCAVFQQGGRIMLSTAFTYS---FLVNNVKADSAvKGgsPRLA--TNRPVDTSHV-RSIVKYLGENlg----------- 95 
ABS05839           9 LPALQIRQGERFIYCFAVDGK---VLPSFTAVSRVhRSnaALHG--YQRPEVLSHI-KAIRRYL-ESsd----------- 70 
WP_015810476      21 IKTFVGYNTGFRTLTLNMSLY---EVNEMTEVANEq---sLNTIevAQRKLDISHA-SSIAKYILKGllaaisnsprlng 93  Dyadobacter...
WP_012267256      77 ---------------iRFFNSIV--VvllpnSnEQREFWDFStvSSqgktvEKWVNLKLYKNVaRI--------VIDGQH 131 Microcystis
WP_006619836      90 -------------nqpWILGTLTanV-----NpEDIQIIDLG---------RGVCFVVIPRGH-KLd-------ITDGQH 134 Arthrospira
jgi:Glo7428_1935  94 -------------nrpWVLGTITanV-----DeHNITVHELG---------RGLCIVVIPNKV-KLd-------ITDGQH 138
jgi:Cal7507_4531 100 -------------ekpWIVGTLTanL-----ApKDITILELG---------RGICLVVIRRGV-KLd-------ITDGQH 144
WP_015151421      95 -------------gkpWILGTLTanV-----DpSKIELIELG---------RGICLVVIPRGV-KLd-------ITDGQH 139 Oscillatori...
jgi:PCC7424_4839  95 -------------nkpWILGTLTanI-----DpKDLTLIELG---------RGICLVIIDRGV-KLd-------ITDGQH 139
WP_012595682     114 ---------------kYILPPFIfnC-----N-TPLKVFSYG--TGp----VQSGYAIISSNI-ELy-------VTDGQH 158 Rippkaea or...
jgi:Amir_3764     96 ---------------nYIMPPLTlnV-------KNIPILHVPegSFg----KTVGFAVIGDDT-KFs-------VTDGQH 141
ABS05839          71 ---------------aMLPNAIVlaF-----N-ESVRFQPSRrkNIvd--ySTMGELIIPIDE-TIdeadkaawLVDGQQ 126
WP_015810476      94 sssfariskamgeqpyIAIPPLVasLrntgfGgSNLQVLPLKtiGS-----EEVACFKIFLSQsDTl------wIVDGQH 162 Dyadobacter...
WP_012267256     132 RLLSLKrywNAHTg-----KEP-------L--------NSQQLkdsfdcsetfdiPVVYLVfrELGrvgysnasetirdd 191 Microcystis
WP_006619836     135 RKTAIH---QLIEs----dLGKl------I--------GEDDF------------PITLVL--EEN-------------- 165 Arthrospira
jgi:Glo7428_1935 139 RKSAIQ---ELVLg----nESHl------I--------SDDDF------------PITLIL--EAD-------------- 169
jgi:Cal7507_4531 145 RKRAIH---ELIEs----pESHl------I--------SDDDF------------AITLVL--EGD-------------- 175
WP_015151421     140 RKSAIQ---DLIIg----kSGEv------I--------GDNDF------------PITIVL--EPD-------------- 170 Oscillatori...
jgi:PCC7424_4839 140 RKQAIH---ELIEs----pDAKl------I--------GDNDF------------PITLVL--EAD-------------- 170
WP_012595682     159 RLEAIK---KVLp------ERPe------L--------KNDSV------------TVLVVQ--EED-------------- 187 Rippkaea or...
jgi:Amir_3764    142 RLAAIKkygESIDd----pESA-------F--------MSDGI------------SVVIVI--EPD-------------- 174
ABS05839         127 RSAAIR---DAn-----------------V--------DEFPV------------AAVGFI--THG-------------- 150
WP_015810476     163 RRKAIElvsDFIRhvltyhKYPargpillYdggkeqigGDELFvwqvclekmkecTVAIEVhlGLD-------------- 228 Dyadobacter...
WP_012267256     192 iIKATRNIFTVIN-----------------------KTAKSIDKQTQL-------LLDDSKISALIPRKILEEK----VL 237 Microcystis
WP_006619836     166 -FNQCQTDFRDMA------------------------QARQLDKSLLV-------SFGEHSGRIGITKNLVNRVs--mFY 211 Arthrospira
jgi:Glo7428_1935 170 -KRQCQIDFKDMA------------------------QTRPLDKSLLL-------SFGEYSGRVGITKELINRVs--mFQ 215
jgi:Cal7507_4531 176 -FQQCQADFRDMA------------------------QTKQLDKSLLL-------SFGEFSGRVGITKELIKRVp--mFQ 221
WP_015151421     171 -FNQCQSDFRDMA------------------------QTKQLDKSLLL-------SFGEFEGRVGITKRVIEEVf--mFR 216 Oscillatori...
jgi:PCC7424_4839 171 -FNQCQTDFRDMA------------------------QTKNLDKSLLL-------SFGEFEGKVGITKNLIEKVp--mFL 216
WP_012595682     188 -IDQIHQDFADCA-----------------------K-NQPIPKALRA-------AFDVSDTLSKLARQISQDLv--iFT 233 Rippkaea or...
jgi:Amir_3764    175 -TARIHQDFADAA------------------------QTKQIPASLLA-------VYNTREPLNRVLTKVVEEAt--lFC 220
ABS05839         151 -EEEQRSQFILVNnakplpkglihellpdtvghlpaKYAKRQLPALLMsrlnnedLFSYNDDDSPFQGRIATPTapdgYI 229
WP_015810476     229 -VEKERQLFHDLN-----------------------NLGKRVDRGMAL-------QYDGSNPVNTYIKDHLFAT----IF 273 Dyadobacter...
WP_012267256     238 edkYVKWSSTNSLNQADPYLTTLNLISECTMEILKDspqalkksfnspnerqMALKDYYDSHPNLSQigtkavlnWFFNE 317 Microcystis
WP_006619836     212 ---GKTEKVKKSPSTKQKLIYTNAYIVNLVSCAFTN----------------QPDNDLEDYDVEMAS-----------HE 261 Arthrospira
jgi:Glo7428_1935 216 ---DKTEKIKSTPATKNRLIYTTNYIARFVSCVFAN----------------DPADELKNYEVEAAS-----------GS 265
jgi:Cal7507_4531 222 ---GKTEKIKSSPATKQKLIYTTNFIARFVSCVFTN----------------DPSNQLRDYDVYQAS-----------DA 271
WP_015151421     217 ---GKTEKIKSSPASKKKLIYTTNYLAKLVSCAFAG----------------DANNELREYGVQEAA-----------DA 266 Oscillatori...
jgi:PCC7424_4839 217 ---NKTEKIKNSPASKQKLIYTSNYIAKLASCAFVN----------------NDKNELEDYEVEQAS-----------QA 266
WP_012595682     234 ---GRIDKISGSVGKAPDYMFTMNQLRVGVAEFLFG----------------SSRKQLFESHVNVNR--------AEYEK 286 Rippkaea or...
jgi:Amir_3764    221 ---GRIDETSKSLPKNSPSIFLLNQVRGMVKELLFHdyalsessiparsnqvIGSTQAQDLYIARIK--------TMLEI 289
ABS05839         230 kdnSVLKMIESSLNEGALYQYr------------------------------NPSDHSGDADAMLLHl------kIFWSL 273
WP_015810476     274 pesGIQEITERQRKDGIESGFTHQEVVSINALLFLNkts-----------iqSATPSQVDAKIELAN--------RFWKT 334 Dyadobacter...
WP_012267256     318 LQPFkdwisqlnylevdvpIQPdqPQLKPSQKAAI--------------KRLRQSSIlytvLGQKILFFAVSRYLLRIRK 383 Microcystis
WP_006619836     262 LTQC---------------LNQffSECLVTSHIANqsvdel---tveevANFKEKYL----LGFRVGLEILGRLLYMTYD 319 Arthrospira
jgi:Glo7428_1935 266 LAEC---------------LNQffLECHHTRYIVEkahqnl---tvddiSRFKEECL----LGVSAGLEVLGRLLYHTYA 323
jgi:Cal7507_4531 272 LVIC---------------LNSffSECSNTEYIADstveel---tideiAAFKEDCI----LGISVGLEVLGRLLHYIYD 329
WP_015151421     267 LINA---------------LNQffGECTQTRHIFKtsaedl---tvdeiDTFKNENL----LGRSVGMEILGQLLYCIYD 324 Oscillatori...
jgi:PCC7424_4839 267 LINC---------------LNQffSTCHQTQFIAEtrvedl---tvnqiMEFKEKCI----LGKSVGLEILGRLLYLTYD 324
WP_012595682     287 MLTN---------------TKYfyTEFAKHNEVWTllfqpasqttglnlYEIRQKRI----DFNSVGFQIISRIGHLIFN 347 Rippkaea or...
jgi:Amir_3764    290 LTKY---------------MTP--WNAIAELPTSGgpa--------nqvVDYRKQYI----NMTATGLVIIGHVAYEIEK 340
ABS05839         274 VRAT---------------FPEa-WSMPPRKSRLT----------------------------HGVGIQAMGFVMDALTE 309
WP_015810476     335 VAEI--------------------------PGISS--------------VDARRDTV----AAQPVVLKALAKLTYDFHS 370 Dyadobacter...
WP_012267256     384 EY--------RITATL-SAISDsIKkmdqegfFQRNQPHWSNIIVqPnenls---------iltkgSGAdkcveLvki-- 443 Microcystis
WP_006619836     320 GQq------nEFNRNQiSELAQ-LD-------WSRESRLWENNVVtI-------------------DPNpknphKpy--- 363 Arthrospira
jgi:Glo7428_1935 324 QDd------nYFNQTKiSQLAQ-LD-------WSRENELWRDNIVrI-------------------DLKpknpaKpy--- 367
jgi:Cal7507_4531 330 PEn------nSFNDEKvVQLAQ-LD-------WSRENQLWKDNVIrI-------------------DTQpknpeKpy--- 373
WP_015151421     325 KTd------sCFDPNKvSKLAQ-ID-------WSRESPLWKDNVVsI-------------------DPNaknpaKry--- 368 Oscillatori...
jgi:PCC7424_4839 325 KSn------nTFVPEKvSQIAQ-ID-------WSISSNLWQGNIVkH-------------------DPNpvntaKay--- 368
WP_012595682     348 QTpvl---sdVQHETLiKTLAN-LD-------YSRECQLWQNSVVt--------------------DKEdkqgnItktiv 396 Rippkaea or...
jgi:Amir_3764    341 NPd------pAWREQRyVELAQkID-------WRRDAEIWQNNIIsG-------------------DKI----------- 377
ABS05839         310 NTpaaklpdlDLHEPL-QRLREaCA-------WTSGT--WQ---FgK-------------------SDQrhwnsL----- 352
WP_015810476     371 EKkrtw-nipEYQKQLwEAIAS-FD-------FSHENPAWRYYQLeSdeieemgltslesylpsieDGNrdlgqF----- 436 Dyadobacter...
WP_012267256     444 -ilSDTSDGVRELIKKTKEEIS 464 Microcystis
WP_006619836     364 -kiSMGASQVRIAVNIVKSHLG 384 Arthrospira
jgi:Glo7428_1935 368 -kvSFGGSAIAAAVNTVQVKLG 388
jgi:Cal7507_4531 374 -kiSATVSAVTDAVKIVKITlg 394
WP_015151421     369 -kiTASGNPVRIAINQAKNHLG 389 Oscillatoria acuminata
jgi:PCC7424_4839 369 -kiSGGIIPTKMAVNTAKAALG 389
WP_012595682     397 nhqTTVNKGYKIAVRELENRTG 418 Rippkaea orientalis
jgi:Amir_3764    378 ---TTVRGPGRVAAGKVMEQLG 396
ABS05839         353 ---QNTPNDVRLLTNYLLRvir 371
WP_015810476     437 ---SNGMFHFGAKHNDIYPIIG 455 Dyadobacter fermentans
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