Conserved Protein Domain Family
Rhizobitoxine-FADS-like

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cd03510: Rhizobitoxine-FADS-like 
This CD includes the dihydrorhizobitoxine fatty acid desaturase (RtxC) characterized in Bradyrhizobium japonicum USDA110, and other related proteins. Dihydrorhizobitoxine desaturase is reported to be involved in the final step of rhizobitoxine biosynthesis. This domain family appears to be structurally related to the membrane fatty acid desaturases and the alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXX(X)HH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.
Statistics
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PSSM-Id: 239587
Aligned: 25 rows
Threshold Bit Score: 122.008
Created: 17-Feb-2006
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative
Feature 1:putative di-iron ligands [ion binding site]
Evidence:
  • Comment:Putative catalytically essential di-iron binding histidine residues; based on similarity to stearoyl-CoA desaturase.
  • Comment:Mutation of any one of these eight histidines in stearoyl-CoA desaturase resulted in complete inactivity.
  • Citation:PMID 7947684

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                              #   #                                #   
BAC47345     44 DYAVIAACTLATVsv-swWLYPLAVLLIGAYQrGLTTIAHDAAHRTLaknTTWNYVLGILFASYPlFQRHWAYRISHVyl 122 Bradyrhizobium j...
ZP_00245643  62 SVGVSAAAITFGLavwpsPWVLASVLVVGVQQhGFFILAHEAAHYRLlssRRLNDVLGRLIGMVG-GISMCTYRVIHRl- 139 Rubrivivax gelat...
BAE68032     44 DYTIMAACAVATVrv-swWLYPLALLIIGAHQrGLTTISHDAAHRILaknRLLNNVLGTIFAAYPiFQRHWAYRVSHVyl 122 Xanthomonas oryz...
CAD70193     35 DVLVIASAVALTQws--lYAYPLSVLIIGSRQrALASLVHEAAHLTLtqsRRLNYAIGHYLTGLPiFQDYEAYRHSHVhm 112 Pseudomonas syri...
YP_441912    33 DYLCIAAAVYATYws--mWCYPLSLLVIGSRQrALASLLHESCHKTFmrnRALNDLFGRWLAGYPiFQSHRAYVKSHVld 110 Burkholderia tha...
ZP_00367536  29 DYLQIILIIVISCfmqniFMYLFAVLFIGTRQrALATILHESAHRILaknRKLNDFLGKYPSGYLiFQTFKKYRQSHVik 108 Campylobacter co...
YP_468312    31 IWLQIIISWTIALlg-pwWVLWLPFLINCAVTqGMLLWVHEASHFHLypdRRKNDIWCDVFFAAPvGMSVAAYRLRHMs- 108 Rhizobium etli C...
CAD15727     47 GYMAWSFSVDGSLgaarwVMEAVVCIFFARQLrAMENIVHFGSHLNItskRSVNDAIVNAVAAVPtFQWVQRYRVFHNk- 125 Ralstonia solana...
CAG41572     36 DWLVILGSACISIymsnlIIYIISIILIGSRMrAFDNLMHEACHRSLftnKFYNKWIACLLVAFPiFTSFTTYCNSHFk- 114 Staphylococcus a...
ABB10856     35 DWLGILLCWAAIRfvpnpFVYVVAVLLIAGRLqAFGVILHDACHLPMr-rMTLPLALVEALAGWTiGSSIAAMRYHHLr- 112 Burkholderia sp....
Feature 1       ##                                                                              
BAC47345    123 HHPYLGdpdKDPDLKfflasgvydvqrperyafniiwkpifggatvaylkylwtn---------------rfsvedtedq 187 Bradyrhizobium j...
ZP_00245643 140 HHNHLYg-pQDPDTAihggyprgvaylwkklgadllganawktyayffgapairdetamggegalrsqkllndtsadlrr 218 Rubrivivax gelat...
BAE68032    123 HHPHLGdpeQDPDLKffvksgvytvrdpreyksfivwksifggatlrylsylwsnr-------------ffvlggkeriv 189 Xanthomonas oryz...
CAD70193    113 HHHHLGdadKDPDYRyyiesglqatedrfdfmfnhllrtvlflnifsylryl----------------------vihrlg 170 Pseudomonas syri...
YP_441912   111 HHTFLGdarRDPDYIhyiesglfdvrdrldfvtrfivktilllnvagylryl----------------------lmnrlg 168 Burkholderia tha...
ZP_00367536 109 HHGFLGienKDPDYDfyiqsklfasyslkefifrhlilplflsktfdfisy------------------------liknr 164 Campylobacter co...
YP_468312   109 HHAHLGt-eQDADGYpyrepikgfralawvmmkalsggigvwlaadkyggsa---------------------rkaasgs 166 Rhizobium etli C...
CAD15727    126 HHVLFGg-dDDPCKNrieaingirdrvesrqlglvsgivygiysfyr-------------------------------ev 173 Ralstonia solana...
CAG41572    115 HHRNLWdeeKDPDTKryrivgldkpqkdvkkfiinhivkvlflfhvpkyvlg---------------------tvsanly 173 Staphylococcus a...
ABB10856    113 HHRAVGt-aEDPYLHrlaarggwvqrmmmlrgallpvwwplralmaplalawpafrpwya------rgfmqdrsrqdlrr 185 Burkholderia sp....
Feature 1                                                                                       
BAC47345    188 srsgilidrygfylfwisilagsyvlgllhIVVLFWIVPYLTTFqvLGWFIELAEHSPmcenetqnv------------y 255 Bradyrhizobium j...
ZP_00245643 219 aarqdrwwvvaaqlalpaasfglggwqglaQYAVLWALPLLTVLqpILRLRAICEHGAvtdlgspltaarsnltgpaksg 298 Rubrivivax gelat...
BAE68032    190 dkrdvlidsygfsafwiavivgftsanalhLLVLFWLIPYFTTFqvLGWFTELAEHSPmcesevknv------------y 257 Xanthomonas oryz...
CAD70193    171 allksprkaltliavhavlfslfyattgvyGYLMFWLVPYLTAFqvIGWLSEVSEHFGlfgreqeal------------r 238 Pseudomonas syri...
YP_441912   169 eisrakkelaqlvltqaaifaafyvavgplGYVVFWIVPIITTFqvIGWFSEISEHYPvirttrstl------------t 236 Burkholderia tha...
ZP_00367536 165 lgdfkdkeikylilfwivifgicfyvnvldILLMYWFVPLLTSFpmVGHFIEMAEHFPiiknkrei-------------e 231 Campylobacter co...
YP_468312   167 slspswfaptatimfngllfvlcivtgrwyLYILLWGYPIAAVAiaLNIVRTIAEHQPedyplykdareq------tmip 240 Rhizobium etli C...
CAD15727    174 gsnrtillysllyhaaayfamnalnpefagFFYGHLLVAGLLVLpcLRLVAEWSEHDYaasdtea--------------- 238 Ralstonia solana...
CAG41572    174 srdtpkseiwtrnifwvtiitlsimfnfwlYVILYWFIPLLTTFqiIRYWAEMAEHSGlnndselt-------------- 239 Staphylococcus a...
ABB10856    186 hpeviacaradlphcagyllaiaavvhwdlPFFTYYGLPWIVGGi-MNANRVLLEHQHveiderapes---------iwq 255 Burkholderia sp....
Feature 1                             #  ##                 
BAC47345    256 ltrnrkgSFLERAILGQNLdEYHLEHHLSPGIPFWLLRKAQKIR 299 Bradyrhizobium japonicum USDA 110
ZP_00245643 299 raadtllNLLGRALLFPHHvNHHLEHHLYPAVPHYHLPRLHRLL 342 Rubrivivax gelatinosus PM1
BAE68032    258 ltrnrkgGLIERLLFGVNYdEYHLEHHLSPAVPFWLLKKAQKIR 301 Xanthomonas oryzae pv. oryzae MAFF 311018
CAD70193    239 itrnrfpSWWERLFIGMHGdNLHLTHHLFAGIPYWNLHKAHSIL 282 Pseudomonas syringae
YP_441912   237 itrnrfpVLIERAFVGMHGdNYHLVHHLLAGIPFWNLRRAHAIL 280 Burkholderia thailandensis E264
ZP_00367536 232 kswnrfgNKIELFFTGLHKeNYHLIHHLFANIPFWNLDKAHNIL 275 Campylobacter coli RM2228
YP_468312   241 larttvpNWFEKWLMYQANfNYHIEHHLFPAIPQHNLAKLHKHL 284 Rhizobium etli CFN 42
CAD15727    239 qatfnncSFVDKLIFHPAGdAYHLLHHLYPAIPWWRQGAAHRYL 282 Ralstonia solanacearum
CAG41572    240 asrntfgMPWTIFLFHPHHdNFHLVHHLFPAIPHYNLKKAHIIL 283 Staphylococcus aureus subsp. aureus MRSA252
ABB10856    256 mtrtmtfGWIGKLVLYPRNiGFHQVHHAYPALALEHLPAVHRYL 299 Burkholderia sp. 383

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