Conserved Protein Domain Family
UpxZ

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pfam06603: UpxZ 
UpxZ family of transcription anti-terminator antagonists
The UpxZ family of proteins acts to inhibit transcription of heterologous capsular polysaccharide loci in Bacteroides species by interfering with the action of the UpxY family of transcription anti-terminators. As antagonists of polysaccharide locus-specific UpxY transcription anti-terminators, the UpxZ proteins exert a hierarchical level of regulation, insuring that only one of the multiple phase-variable capsular polysaccharide loci per cell characteriztic of this genus is transcribed at a time.
Statistics
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PSSM-Id: 429027
Aligned: 12 rows
Threshold Bit Score: 148.241
Created: 22-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
jgi:Bache_2604   8 ISLQRAAHDLMYLGTDGSPVYSDELSRRNGQVYCLATALYDSisGGSTIEEQANVCLALLMGYSASFID-HGEKQDHIQE 86 
Q5LF43           9 SALYASAHELCYLGMDGRPIYSDQFTRLNRDVFSQANALYDK--RGNSHEEEARLCLSLLMGYNATLYN-NGDKEERIQH 85  Bacteroides f...
Q5L9S1           9 TALYTLAHELLYLGSDGSPIYSDHFSRLNGDVLSRANTLYPH--HGSTDEEEARLCLSLLMGYNATIYN-NGDKEVRIQQ 85  Bacteroides f...
jgi:Bache_2152   9 LELQQRAHDLMYLDIYGESVYSDDFCCLNKEVLVKSDSLFSE--KGSGVEEEANLCLALLMGYNATIYD-NGDKGQKKQA 85 
WP_005813291     8 ASLQRAAHDLMYLGMDGSPIYSDDLSRRNNEVYRLTTTLYNSgvQGSTVEEQASVCLALLMGYNASFID-HGEKREHVQK 86  Bacteroides f...
Q5LE60           9 EQLQSLAHELLYLGVDGAPIYTDHFRQLNKEVLEQSDALYPQ--RGATPEEEANICLALLMGYNATIYN-QGDKEEKKQV 85  Bacteroides f...
Q5LGJ1           7 NSVSSVVKKLLEYGEDGTPVYVNELTALNQELRNLCADLLLQ--KGESPEEEAEILVTLFKGYDTMLFNfSSENEQVIQE 84  Bacteroides f...
Q8A770          11 EGLLSLVRMLLPDGGSAGCVYLDDLSALQRSIHEKINDLYSQ--RGETPEQDATLCLAILQGYNVSMYA-NPEDEERKQA 87  Bacteroides t...
Q8AAT7          13 EKLQKTVDTLLHMGENMDCICVDDLSLLNKEIHEQINDLYPY--HGKTAEQEAALCLSLLMGYSVSMYA-NSEDEAKKKT 89  Bacteroides t...
Q5L953           9 DSLCAVSHELLHLGLDGEPIYSDRFRQLNTDVYHRCEHLFGS--HGRTLEEEASLCIALLTGYNATIYN-HGDKEDKIQS 85  Bacteroides f...
Q5LC61           9 HELQHVAHELLYLGADGSPIYTDSFRQLNTEVLQKSDALFAL--KGENPEEEARLCLALLMGYNATIYD-YGDKESKKQV 85  Bacteroides f...
Q5LFL2           5 QNLQHIARELLYLGMDGSPIYTDHFRQLNTEVFRLSEALFSM--KGATSEEEAAICLSLLMGYNATIYN-DGDKESKIQS 81  Bacteroides f...
jgi:Bache_2604  87 VLNRCWDVLDSLPASLLKLRLLTACYG 113
Q5LF43          86 ILDRCWDVLEHLPASLLKVQLLVYCYG 112 Bacteroides fragilis NCTC 9343
Q5L9S1          86 ILNRCWEVLDRLPASLLKVRLLTYCYG 112 Bacteroides fragilis NCTC 9343
jgi:Bache_2152  86 VLDRISEILEQLPASLLKVRLLACCYG 112
WP_005813291    87 ILDRCWDILDTLPASLLKLRLLTACYG 113 Bacteroides fragilis
Q5LE60          86 VLNRCWDVLDQLPATLLKCQLLTYCYG 112 Bacteroides fragilis NCTC 9343
Q5LGJ1          85 LLDRSMTVLEKLPASVLKCQLLLECFE 111 Bacteroides fragilis NCTC 9343
Q8A770          88 VLTRSLSLLDVLPPSLLKQQLSAVCYG 114 Bacteroides thetaiotaomicron
Q8AAT7          90 VLRRSQMILKNQLPSPLKIQLHTIydk 116 Bacteroides thetaiotaomicron
Q5L953          86 VLNRSWDLLDTLPVSLLKCRLLVACYa 112 Bacteroides fragilis NCTC 9343
Q5LC61          86 ILDRSLLVLESLPSSLLKCQLLTYCYG 112 Bacteroides fragilis NCTC 9343
Q5LFL2          82 ILDRSFAVLDHLPASLLKCQLLTYCYG 108 Bacteroides fragilis NCTC 9343
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