4OAA,2Y5Y,2V8N,1PV6,5GXB


Conserved Protein Domain Family
MFS_LacY

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cd06172: MFS_LacY 
Click on image for an interactive view with Cn3D
LacY proton/sugar symporter family of the Major Facilitator Superfamily of transporters
LacY proton/sugar family (also called LacY/RafB family) symporters are integral membrane proteins responsible for the transport of specific beta-glucosides into the cell accompanied by the import of a proton. Members include lactose permease (LacY), raffinose permease (RafB), and sucrose permease, which facilitate the transport of beta-galactosides, raffinose, and sucrose, respectively. The prototypical member, LacY, contains 12 transmembrane helices connected by hydrophilic loops with both N and C termini on the cytoplasmic face. The LacY/RafB permease family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.
Statistics
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PSSM-Id: 340862
Aligned: 22 rows
Threshold Bit Score: 495.599
Created: 8-Jan-2008
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
chemical
Conserved site includes 22 residues -Click on image for an interactive view with Cn3D
Feature 1:chemical substrate binding pocket [chemical binding site]
Evidence:
  • Structure:4OAA; Escherichia coli Lactose permease binds high-affinity lactose analog; contacts at 5A
  • Structure:2Y5Y; Escherichia coli LacY binds affinity inactivator; contacts at 5A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                #  #  ##                                                             
4OAA_A      9 FWMFGLFFFFYFFIMGAYFPFFPIWLhdinh---isksdTWIIFAAISLFSLLFQPLFGLLSDKLGlRKYLLWIITGMLV 85  Escherichia coli s...
P30000     12 YRFASSYSFLFFISWSLWWSLYAIWLkghlg---ltgteLGTLYSVNQFTSILFMMFYGIVQDKLGlKKPLIWCMSFILV 88  Escherichia coli
AIW38908    8 YWKLSAYFFFFFFTWSSSYSLFAIWLgqein---lngsaTGIIFSVNAVFALCMQPLYGFISDKLGlKKKILFMISCLLI 84  Bacillus subtilis
CUN74351    8 YLKLSAYFFFFFVTWSASYSLFSIWLgqein---lsgadTGIVFSVNAIFALCMQPLYGYISDKIGlRKSILTFISVLLI 84  Clostridium sp. JCC
AJQ28973    6 YWKLSAFFFAFFFCWLVFFAFMPIWFkqilh---lsgteIGTIYSVNAIFTMMMQPCYGYISDRIGlKKTLLYFITGMVS 82  Pelosinus fermentans
KQW93613    8 YRFLSTFVYVYFFAQAMSISLLALWLrttlq---lsgteTGIVFAANFVAAMCSQPIYGFVSDRIGtRKHILWVVSALCA 84  Massilia sp. Root418
AIZ16641   13 YLQSSFGIFLFFCSWGIWWSFFQRWLnsmgl----ngaeVGTIYSINSLATLVLMFCYGLIQDNLGlKRHLVLAISTIAA 88  Bifidobacterium ps...
GAF39522   16 YLQSSLTLLLFFASWGIWWSFFQLWLtsannglhlsgsaVGTVYSANSLVTLILMFVYGTLQDKLMiKRWLLIFCAVIAT 95  Lactobacillus comp...
BAL84978   12 YRMGSLQIMLFFGGWGIWWSFFQIWLttkqg---fsgtqVGTIFSFGSAAALLLMFVYGSIQDKLGmKKHLLIALIACQV 88  Selenomonas rumina...
CBA29547   12 YVKISSFIFLYFFTWSASIGLLAIWLgqkth---lsgsvIGTVFAVNGIFSVILKPVYGYILDKIGmSKHLLYFVVGMSA 88  Cronobacter turice...
Feature 1                                     ##  ##  #                 #  ##  #              
4OAA_A     86 MFAPFFIFIFGPlLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRrsnFEFGRARMFGCVGWALCASIVGIMFtiN 165 Escherichia coli s...
P30000     89 LTGPFMIYVYEPlLQSNFSVGLILGALFFGLGYLAGCGLLDSFTEKMARnfhFEYGTARAWGSFGYAIGAFFAGIFFsiS 168 Escherichia coli
AIW38908   85 FTGPFYIFVYGPlLQYNVFLGAVVGGLYLGAAFLAGIGAIETYIEKVSRkydFEYGKSRMWGSLGWAAAAFFAGQLFniN 164 Bacillus subtilis
CUN74351   85 FVGPFYIYVYGPlLKYNTILGAVVGGIYLGTAFLAGVGAIESYVEKIGRkynFEYGRSRMWGSLGWAAATFFAGQLFniN 164 Clostridium sp. JCC
AJQ28973   83 LTGPFFIFVYGPlLTSFFSAGVVVGAIFMALVFLAGCAVVESFIEKVGRrynFEFGRARMWGSLGAAVGIFFAGIAFniN 162 Pelosinus fermentans
KQW93613   85 LCGVFFLFVYGPlLRANVVLGAIVGGIYLGVTFIAGSYAIESYVDRIGRrhgFEYSRVRLWGSLGFASAAMFSGRIYniN 164 Massilia sp. Root418
AIZ16641   89 LVGPFVQFIYAPlMRTNMMAAAMIGSIVLSAGFMAGCSLIEAVTERYSRkfnFEYGQSRAWGSFGYAIVALVAGIVFniN 168 Bifidobacterium ps...
GAF39522   96 LTGPFVIYVYGPlLKTNFTLGIVVGAIVLSAGFLASAGIFEAVSERFSRrfnFEYGQARAWGSFGYAVVALIAGFLFviN 175 Lactobacillus comp...
BAL84978   89 FLAPFFTWVYVPmLEANFYLGAVVGAVYLAVSYLAACPVFEAVTERMSRrfhFEYGQARAWGSFGYAISALAAGFLFtvN 168 Selenomonas rumina...
CBA29547   89 LMAPFFIYVYQPlLVSNTLVGIIVGAIYLSFAWYAGVAACESYTDRYSRlngMEFGQIRMWGSLGWAVASSFSGLLFnlS 168 Cronobacter turice...
Feature 1                                                                                     
4OAA_A    166 NQFVFWLGSGCALILAVLLffaktdapssatvana----vganhsafslklaleLFRQPKLWFLSLYVIGVSCTYDVFDQ 241 Escherichia coli s...
P30000    169 PHINFWLVSLFGAVFMMINmrfkdkdhqciaa----------daggvkkedfiaVFKDRNFWVFVIFIVGTWSFYNIFDQ 238 Escherichia coli
AIW38908  165 PNINFWIASVSAVILTAIImsvkiemtdhekn----------radsvrlkdvgrLFLLRDFWFFMLYIIGVTCIYGVYDQ 234 Bacillus subtilis
CUN74351  165 PNINFWIASISAIILFFIIlsisiemsdedle----------kaqsvkikdvclLFKLKEFWLFILYVIGVTCFYNVYDQ 234 Clostridium sp. JCC
AJQ28973  163 PNIIFWFASVGSAVMFIVLmnvkldeadveva----------kqnnislkdvrqLFKSKDVWSFMVFILGSACVYSVFDQ 232 Pelosinus fermentans
KQW93613  165 PSINFFLASTAGVAMLAMLllwrtrddgadta----------aansvrladalgLLRDPKFWRFMVFVLGVTNIYLVFDQ 234 Massilia sp. Root418
AIZ16641  169 PMINFWLGSAFGVGMLIVYltwypadqhaalkees---apdaeptnpslkemvkVLRMPALWVLIVFMLLTNTFYTVFDQ 245 Bifidobacterium ps...
GAF39522  176 PNLNFWGGSFFGLLLLLNLlfwkpkaertadhqda---qatqtgqtpslkdmvhLLKLPELWVIIIFIMFTWTFYTVFDQ 252 Lactobacillus comp...
BAL84978  169 PYLVFWTGSAVSTVLLLTLlfmkpekkeenlarfedksesqkdsktptmkdilgVFKIADLWKIIGFVMMSWTFYTVFDQ 248 Selenomonas rumina...
CBA29547  169 PAYNFILGSVASLVMLGVLlslkvntstthase-------vlskqkiamsdvyeLLRSRKFWAFCLYVAGVAWMMFIAEQ 241 Cronobacter turice...
Feature 1                                 #  #   #                                            
4OAA_A    242 QFANFFts-fFATGEQGTRVFWYVTTMGELLNASIMFFAPLIINrIGGKNALLLAGTIMSVRIIGSSFAtsaleVVILKT 320 Escherichia coli s...
P30000    239 QLFPVFyaglFESHDVGTRLYGYLNSFQVVLEALCMAIIPFFVNrVGPKNALLIGVVIMALRILSCALFvnpwiISLVKL 318 Escherichia coli
AIW38908  235 QFPIYYas-lFPSVSMGNQVFGYLNSFQVFLEAGMMFLAPFIVNkFGAKNSLILAGFLMAFRIVGSGIAvgpvgISSMKL 313 Bacillus subtilis
CUN74351  235 QFPLYYss-mFSSKEIGNQIFGYLNSLQVFLEAGMMFMAPFIVNkIGAKKGLILAGLLMSFRIIGSGLAtepilISCMKL 313 Clostridium sp. JCC
AJQ28973  233 QFPIYYas-lFPTEAEGNSAFGYLNSFQVFLEAGGMCIAPWIVNkIGAKKGLVLAATIMTFRMLGSGIVtntygISAIKL 311 Pelosinus fermentans
KQW93613  235 QFPSYFts-lFPDPKTGAAMFGYLNSAQIFIEACGLFLSPLLVKrIGAKNGLLLAGSIMLVRIAGSGLAvgplsISALKM 313 Massilia sp. Root418
AIZ16641  246 QMFPTYyaslFPTEATGNTVYGILNSVQVFCESAMMGVVPIIMRkIGVRNALLLGGTVMFLRIGLCGIFhdpvmISIVKM 325 Bifidobacterium ps...
GAF39522  253 QMFPDFytklFASPELGQHMYGTLNSIQVFFEAIMMAVVPLIMRkIGVRKTLLLGVGVMCFRIGACGFAtnpaaVSMIKM 332 Lactobacillus comp...
BAL84978  249 QMFPEFftrfFDTPEQGQQAYGVLNSIEVFLEFLMMGLVPVFMKrIGVRKAILLSCCIMILRIGGCGLAssplgVGIIKL 328 Selenomonas rumina...
CBA29547  242 QFSRYFvt-fFDDVQQGNAVFGYLGTVQSGMEFVMYMVIPVFVNyVGAKKGLLIVGLVVGARLIISGMCdshllISVLKP 320 Cronobacter turice...
Feature 1      ##  #   #                   #       #                                          
4OAA_A    321 LHMFEVPFLLVGCFKYITSQFEVRfsATIYLVCFCFFKQLAMIFMSVLAGNMYEsiGFQGAYLVLGLVALGFTLISVFTL 400 Escherichia coli s...
P30000    319 LHAIEVPLCVISVFKYSVANFDKRlsSTIFLIGFQIASSLGIVLLSTPTGILFDhaGYQTVFFAISGIVCLMLLFGIFFL 398 Escherichia coli
AIW38908  314 IHALELPIMLIAVFKYLAANFDTRlsSVLYLVGFQFASQAGASILSPLAGGLYDsaGFRQTYLIMGIVVFGFTVISIFTL 393 Bacillus subtilis
CUN74351  314 LHSVELPIMLIAVFKYLAANFDTRlsSILYLVGYQFASQVGATVLSPVIGRFYDtvGFSSTYIIMGCIVLVFTIISMFTL 393 Clostridium sp. JCC
AJQ28973  312 LHAIELSILLVAVFKYLAKNFDNRlsSVMYLVGFQLSNQVGAAILSPIVGSLYDsiGFPPTYLFLGVVVGSFTLFGLFSL 391 Pelosinus fermentans
KQW93613  314 LHSVELPILVVSIFRYIACHFDNRlaSTLYMVGVSFGHSLGLAILSPLVGKSYDlmGFPATYLTLAALGLGFLAASAWAL 393 Massilia sp. Root418
AIZ16641  326 FHAIEVPLFCLPAFRYFTLHFNPKlsATLYMVGFQIASQIGQVVFSTPLGMLHDrlGDRTTFLTISGIVLCAVVYGVFVI 405 Bifidobacterium ps...
GAF39522  333 LHALEVPLFCLPMFRYFTLHFDTKlsASLYMIGFQVAAQVGQVILSTPLGTLRDhiGYSSTFRVISLTVLVAGVFAFFVL 412 Lactobacillus comp...
BAL84978  329 LHAPETALFILAIFRYFTLHFDTRisATLYMVGFQIAAQIGQIIFSAPLGALHDqiGYQQTFLVISGIVCVASLYAFVVL 408 Selenomonas rumina...
CBA29547  321 LYGLEICLLLVSVFKYIAEHFDKRvnATMYLLGYQAMLYVGNVVVSSPAGYLYDriGFEQTYILMGAIALTFTLISAFTL 400 Cronobacter turice...

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