Conserved Protein Domain Family
PBP2_Fbp_like_2

?
cd13547: PBP2_Fbp_like_2 
Substrate binding domain of an uncharacterized ferric iron transporter, a member of the type 2 periplasmic binding fold superfamily.
The periplasmic iron binding protein plays an essential role in the iron uptake pathway of Gram-negative pathogenic bacteria from the Pasteurellaceae and Neisseriaceae families and is critical for survival of these pathogens within the host. This periplasmic domain (Fbp) has high affinity for ferric iron and serves as the primary receptor for transport. After binding iron with high affinity, Fbp interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The ferric iron-binding proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.
Statistics
?
PSSM-Id: 270265
Aligned: 30 rows
Threshold Bit Score: 259.462
Created: 19-Aug-2009
Updated: 2-Oct-2020
Structure
?
Aligned Rows:
 
putative
Feature 1:putative chemical substrate binding site [chemical binding site]
Evidence:
  • Comment:based on sequence similarity to other members of the iron and thiamine transporter family.

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                        
EEG21305      26 KLVVYSAgprPLAERICRGYtea--tgMPVELFTAtTGQLLSKLEaer--fhpRADVVILAsrVAAEALKQghrllpvtl 101 Opitutaceae bac...
YP_003010715  73 PLVVYLNdfdDIVKPMFEEKt-----gYKLEIVSGnGAEIASRIEaek--gnpHWDVVWMDsmPTIDQMGKngqlldnwt 145 Paenibacillus s...
EGA92751      71 PLVVYLNdfdAVIPEMFKEAt-----gYDVEVVSGnGAETMSRIAaea--gnpQWDVVWIDsmYDVYNLAGegqlltdwe 143 Clostridium sym...
YP_002959382  48 TIYFYTSipkDIAVKIADEFqkk-ypnVKVEVYRSgASKVMTKLNaeiesgkiIADVVWLAdpGNTIYLKNkgvlmkytp 126 Thermococcus ga...
ADD27964      21 TLTLYTSevlTNVNPMIELFkra-npgVNVQVFRSgTGEVITRLRaeleagnpQADLLWVAdeTFFRELAAanrlrpvra 99  Meiothermus rub...
ADI14853      22 TLRLYTSqpdEDAARTVEAFrer-ypdVEVRLFRSgTEEVISRFLleaesgapQADVLLVAdaPTFELLKArdllapycs 100 Truepera radiov...
YP_476147     35 TLRLYTSqpdADAQKTVAAFrev-ypeVSVEIFRSgTEEVISRFLleaekgspQADVLLVAdaPTFELLKSrnllepycs 113 Synechococcus s...
ADG07898      47 ALHFYTSqpdTDANKLVQAFkak-ypgVQVDVFRSgTEEVIARLNteaqagslGADVMLLAdaPTFEALKKkdllmpyqp 125 Bacillus tuscia...
YP_920953     57 KVVFYTSipdVIVNSWKGNWskyfgstISLEVWRSgTGKVVAKLLaekkagsvEADVVYIAspFEFETLINesiiekfpd 136 Thermofilum pen...
NP_737058     77 TITVYTSepeEKVDEINAAFmea-npdIKVEVYRAgTGDLNARIAaekasgsiEADVLWAAdaPTFESYAEagdlaelen 155 Corynebacterium...
Feature 1                                                                                       #
EEG21305     102 ppte---qpghpdwhdpegYYYGMAA-AVIGVALRAdhppppagGWDWEDFlqsryps----saegkntRISLPSPtrSG 173 Opitutaceae bac...
YP_003010715 146 psnldgltdfaktvvpandTYFPTGAhAASVIVYNTkafdansaPKTWDDLlnak-----------ykgVVGMADPavAA 214 Paenibacillus s...
EGA92751     144 penaanltefsrnlvpdnkCFYPTGIhAAGVLVYRTdvfteadaPKTFADLtdek-----------ysgKVGMADPgvAA 212 Clostridium sym...
YP_002959382 127 kda----dkvpdfakdpdgYWIAGRF-IAPVIAYNTniv--knpPKKWTDLtdpnykaslpspwnkaegWVAIPNPlySG 199 Thermococcus ga...
ADD27964     100 ttp-----gfpvkfayqggRYYEVRL-LYNGIAINTrklgnlpePQTWRDLlkpd-----------yrdLIGMPNPnfSG 162 Meiothermus rub...
ADI14853     101 pea----aaiddafydpdcTYFGTKV-LATVIAYNPtl----aePVTSWAEltev-----------pagQLIMPSPsySG 160 Truepera radiov...
YP_476147    114 pea----kaiaatyydpdcHYFGTKI-LATVIVYNTak----aqPVDSWAAlaqv-----------pegQLVMPSPtySG 173 Synechococcus s...
ADG07898     126 pgs----nqipqvlvdpdhMYTPTKM-IPVGIIVNTkqfp-dpsGVDWKTLidpa-----------nrgKVVTPSAlySG 188 Bacillus tuscia...
YP_920953    137 ipel---kyipqeyrdprgYYVWGRV-LVMVIVYNPniv--tdpPKSWQDLvkpe-----------wkgKVVIANPlySG 199 Thermofilum pen...
NP_737058    156 vds----sdvieeardeenFYVGTRI-IPTVIAYNTsivdeadlPQSWADLtdpk-----------yadMLVMPDPavSG 219 Corynebacterium...
Feature 1        #                                 ###                #  ##                      
EEG21305     174 ASGDFVMAWLLArgea-gwsDFRQARRHGLEIAgANAQALTGLMTGaNQAVIGAvDYVVLrevergepVRIYYPksggvY 252 Opitutaceae bac...
YP_003010715 215 PAYPFVAWFFQSkgmdqgksYFEGLLKNGVHVYpKNPNVAKALTDGeIKAAALQ-ESNAYtlknsgepVDIVWPaegapA 293 Paenibacillus s...
EGA92751     213 PAYPLAAYFMDSlgleggkeYFQTMFSQGLKVFpKNPQVVQALASGeISVALLQ-ETNAYdmkesgepISIIWPeegalG 291 Clostridium sym...
YP_002959382 200 AATAWVYGISQKyg----wdYFKNARSMGIVVLkSNGAVKNAIIEGqDPIGVTL-DYMVRqsmeegapINYVYPedgtvV 274 Thermococcus ga...
ADD27964     163 AALSTLGTFSQRfg----fsFFEQLQRNGLKVEqSNPILQQKLAEGqYGIAIIT-DFGIRdlirqgapLKVIYPrdgaiL 237 Meiothermus rub...
ADI14853     161 AAAYNLGVFVRTpgi--gfaWYEALEENGTVLTqGNGAVARNVASGeNPYGVVV-DFLAIrareegspVEVVYPeegvpV 237 Truepera radiov...
YP_476147    174 AAAYNLGVITRTpgl--gweWYEALKKNKTVLVqGNGAVARNVASGeQSYGMVV-DFLAIrsrnegspVEVVYPkegvpV 250 Synechococcus s...
ADG07898     189 AAAYTVGVFRNQsdl--gwsYFQHLKNNDVMTVkGNGDVVKRVATGeRPLGIIV-DFMAFrakdqgspVAFVYPksgvpV 265 Bacillus tuscia...
YP_920953    200 STQVAVAALASKfg----wsYFEKLKENDVLVVqDVPDVARVVATGeRPVGVTL-TMYLGay----ptLKFVAPeegaiA 270 Thermofilum pen...
NP_737058    220 AAAFNASVWKNDpal--geeWINALGENNPMIAqSNGPTSQEIASGgRPIGVVV-DYLVRdlaaagspIATIYAeegspY 296 Corynebacterium...
Feature 1                                                
EEG21305     253 VTRPAAVLAgtrqpDAAAAFVRYCLGeaAQREAARVHLLP 292 Opitutaceae bacterium TAV2
YP_003010715 294 SVRVAAIQKeskhqEAAKAFVEFLLDpaTQQALIDKGDES 333 Paenibacillus sp. JDR-2
EGA92751     292 STRVAAISAateqeEIAKAFVNFLLDadTQQKLVDMGDEG 331 Clostridium symbiosum WAL-14163
YP_002959382 275 IPSPIAIMKstknpDAAKAFVDFLLSkdVQELLVQYGIIP 314 Thermococcus gammatolerans EJ3
ADD27964     238 VPTPIGVMAgsrnpALAERFVRFLLSpeAQALFAQQGYIP 277 Meiothermus ruber DSM 1279
ADI14853     238 ITEPVGIVAgtpnrEAAEAFVDFLLSqrGQEVAAEIGYQP 277 Truepera radiovictrix DSM 17093
YP_476147    251 ITEPVGIVKgtsnlEAAQAFVDFLLSqkGQEVAAEMGYMP 290 Synechococcus sp. JA-3-3Ab
ADG07898     266 ITEPVAIAKqsrnpAAAKAFVDFILSdeGQKLETSLGYMP 305 Bacillus tusciae DSM 2912
YP_920953    271 IPSPVGLVKnakhpEDAKVFLRFLLSklGAQALTDAYTYS 310 Thermofilum pendens Hrk 5
NP_737058    297 ITEPAGVFAdseqkEAAERYINFLISveGQELAVEQAYLP 336 Corynebacterium efficiens YS-314

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap