2VMK


Conserved Protein Domain Family
RNaseEG

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TIGR00757: RNaseEG 
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ribonuclease, Rne/Rng family
This model describes ribonuclease G (formerly CafA, cytoplasmic axial filament protein A), the N-terminal domain of ribonuclease E in which ribonuclease activity resides, and related proteins. In E. coli, both RNase E and RNase G have been shown to play a role in the maturation of the 5' end of 16S RNA. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome. [Transcription, Degradation of RNA]
Statistics
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PSSM-Id: 273254
Aligned: 12 rows
Threshold Bit Score: 521.112
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2VMK_A        14 LRVALVD-GQRLYDLDIEspGHEQKKANIYKGKITRIEPSLEAAFVDYGAER-HGFLPLKEIAre--------------- 76   Escherichia coli
P72656        12 QVAAVFW-KDQIQELVVS--TGSQQVGDIYLGLVDNILPSIDAAFINIGDTEkNGFIHVSDLG----------------- 71   Synechocystis ...
WP_010725350  14 IRYAHLK-NGQLFDLIIErkKIRQLKGNIYRGRVTNILRNIQSAFINIDERE-NGFIHISDVLenskkfeqm-------- 83   Chlamydia trac...
WP_010883592  14 IRYAHLK-NGQLFDLTIErkKVRQLKGNIYRGRVTNILRNIQSAFINIDERE-NGFIHISDILenskkfeqm-------- 83   Chlamydia pneu...
KEO12422      14 LRVALVD-GQRLYDLDIEspGHEQKKANIYKGKITRIEPSLEAAFVDYGAER-HGFLPLKEIAre--------------- 76   Escherichia co...
WP_000123199  14 TRVAYID-GGILQEIHIEreARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDK-AAFLHASDIMphte------------- 78   Shigella flexneri
WP_010924529  19 TQIAVLE-DGIVVEHFVTsaASASLVGNIYLGIVQNVLPSMEAAFVDIGRGR-NGVLYAGEVNwdaa------------- 83   Mycobacterium ...
WP_010880813  15 FAFTLVFlGTELKDFKVErrKEKYRTGAFLKGLVKKECPALDGFFLDVGLTK-EALLQEKKNCk---------------- 77   Aquifex aeolicus
WP_010933910  18 IQVALVE-EGRLAELIIErpESMRSIGDIYLGRVHKVVEGLKAAFVDIGQKS-DGFLHFSDVGttsedyralvedddnde 95   Chlorobaculum ...
WP_004596085  15 TRVVLLGqSNNIEDIEFQttVRQQNKGNIYLAKVTRIEPSLQAVFIEYGMDK-SGFLPFSEIHpnyynlptaes------ 87   Rickettsia pro...
KAI98019      14 LRVALVD-GQRLFDLDIEspGHEQKKANIYKGKITRVEPSLEAAFVDYGAER-HGFLPLKEIAre--------------- 76   Haemophilus in...
P45175        15 TRIALVE-TGMLREVHIErqAKRGIVGNIYKGRVTRVLPGMQSAFVDIGLEK-AAFLHAADIVshte------------- 79   Haemophilus in...
2VMK_A        77 -------------------yfPANYSAHG--Rp----------------------------------------------- 88   Escherichia coli
P72656        72 ---------------------PVRLRRTA--G------------------------------------------------ 80   Synechocystis ...
WP_010725350  84 -------------fdidsdadHAEPQPEEtsKa----------------------------------------------- 103  Chlamydia trac...
WP_010883592  84 -------------fdmdvdalPEEASEAP--Llss--------------------------------------------- 103  Chlamydia pneu...
KEO12422      77 -------------------yfPANYSAHG--Rp----------------------------------------------- 88   Escherichia co...
WP_000123199  79 ------------------cvaGEEQKQFT--Vr----------------------------------------------- 91   Shigella flexneri
WP_010924529  84 ------------------glgGADRK------------------------------------------------------ 91   Mycobacterium ...
WP_010880813     --------------------------------------------------------------------------------      Aquifex aeolicus
WP_010933910  96 nggdedddenegddnaeapapPREAARPA--Gqqkseqgqqssg------------------------------------ 137  Chlorobaculum ...
WP_004596085  88 ----------tfpvnafpeiaLANITIED--Dqekpsiiydslidneeidlktiedlveskfqsefnlesaddieiiqsc 155  Rickettsia pro...
KAI98019      77 -------------------yfPDDYVFQGr-------------------------------------------------- 87   Haemophilus in...
P45175        80 ------------------cvdENEQKQFK--Vk----------------------------------------------- 92   Haemophilus in...
2VMK_A        89 ------------NIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRaGGISRRIE-GDDRTELKEAL 155  Escherichia coli
P72656        81 ------------SISELLSPQQRVLVQVMKEPTGNKGPRLTGNISMPGRYMVLMPYGRG-VNLSRRINrEEERSRLRALA 147  Synechocystis ...
WP_010725350 104 ------------PIEELLKLDSPVLVQVVKEPIGTKGARLTSNISIPGRYLVLLPNSPH-RGVSRKIEdPLMRDQLKQLI 170  Chlamydia trac...
WP_010883592 104 ---------eeaPIEEFLKLDSPVLVQVVKEPIGSKGARLTSNISIPGRYLVLLPNSPH-RGVSRKIEdPHMREQLKQLI 173  Chlamydia pneu...
KEO12422      89 ------------NIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRaGGISRRIE-GDDRTELKEAL 155  Escherichia co...
WP_000123199  92 ------------DISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASH-VGVSQRIEsESERERLKKVV 158  Shigella flexneri
WP_010924529  92 -------------IEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRFLVYVPGASS-TGISRKLPd-TERQRLKEIL 156  Mycobacterium ...
WP_010880813  78 ----------------nLRIGDSVIVQLKRKERDLKGAKVTCKVSIPGKYIVYFPETKK-LNFSKKLKgFAFTEDLKKIL 140  Aquifex aeolicus
WP_010933910 138 -daaerrqsytqMIAQKLKPNDSILVQVIKEPIGTKGSRLTSDITIAGRFMVLLPFGGGqIAVSRRVVsRKERGRLKKLV 216  Chlorobaculum ...
WP_004596085 156 ttelnisqykpyKVQDVIRKNQVLLVQVTKEERGNKCAAFTTYISLAGKYCVLMPNTSSqNGISRKISnGEERKRLKDIL 235  Rickettsia pro...
KAI98019      88 -----------pNIRDILVEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVLMPNNPRaGGISRRIE-GDERTELKEAL 155  Haemophilus in...
P45175        93 ------------SISELVREGQDIVVQVVKEPLGTKGARLTTDITLPSRHLVFMPENSH-VGVSQRIEsEEERARLKALV 159  Haemophilus in...
2VMK_A       156 AsLELPEG--MGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFL-----IHQESNVIVRAFRDYLRQDIGE 228  Escherichia coli
P72656       148 V-LIKPPG--MGLLVRTEAEDVPEDAIIEDLENLQKQWELVQQQAMTRSAPML-----LDRDDDFIKRVLRDMYSSEVNR 219  Synechocystis ...
WP_010725350 171 RsFEMPQN--MGLICRTASISASTETLINEAQDLLNTWQSILEKFYSPDHPSL-----LYEETDILKKAVMTCVDKSYKR 243  Chlamydia trac...
WP_010883592 174 RsFEMPQD--MGLICRTASTTASTEALINEAHDLLLTWKTILEKFYSTEQPCL-----LYSETDILKKAVITCIDKNYKR 246  Chlamydia pneu...
KEO12422     156 AsLELPEG--MGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFL-----IHQESNVIVRAFRDYLRQDIGE 228  Escherichia co...
WP_000123199 159 A-EYCDEQ--GGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQ-----LYGELALAQRVLRDFADAELDR 230  Shigella flexneri
WP_010924529 157 R-EVVPSD--AGVIIRTASEGVKEDDIRADVARLRERWEQIEAKAQETKEKAAgaavaLYEEPDVLVKVIRDLFNEDFVG 233  Mycobacterium ...
WP_010880813 141 KeELNDRE---GVIIRASAISATKEQILKELQELRNKWESLKEKAKKVNKGIL-----EEGQPQFIK-TILDYWG-FIKN 210  Aquifex aeolicus
WP_010933910 217 R-SMLPEG--FGAIIRTVAEDQDESLLKQDLEKLLAKWTQIEEKLQDAQPPQL-----IFKEDTIISSVLRDSLTTDVTE 288  Chlorobaculum ...
WP_004596085 236 NkIVSIQKntYSVIVRTAGRGSSTLDLKKDYNYLARLWNKIRKSTIKFSAPCF-----IHEEDSIIRKTIRDMCDHNVKE 310  Rickettsia pro...
KAI98019     156 SsLDVPDG--VGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSRPAPFL-----IHQESDVIVRAIRDYLRRDIGE 228  Haemophilus in...
P45175       160 E-PFCDEL--GGFIIRTATEGASEEELRQDAEFLKRLWRKVLERKSKYPTKSK-----IYGEPALPQRILRDFIGTNLEK 231  Haemophilus in...
2VMK_A       229 ILIDN----PKVLELARQHIAaLGRPDFSskIKLYTGEIp--------LFSHYQIESQIESAFQREVRLPSGGSIVIDST 296  Escherichia coli
P72656       220 IVVDTpagmKRIKQQLMNWDQ-GRLPEGVl-IDCHRESLs--------ILEYFRVNATIREALKPRVDLPSGGYIIIEPT 289  Synechocystis ...
WP_010725350 244 LLIDD----YATYQKCKRLLG-KYSPDTTvkIEYYRDSVp--------MFERFNIEKEIDRATKRKIWLSSGGYLFFDKT 310  Chlamydia trac...
WP_010883592 247 LLIDD----YATYQKCKHMLK-KYSPDASikIEYYRDSIp--------MFERFNIEKEIDKATRRKIWLSSGGYLFFDKT 313  Chlamydia pneu...
KEO12422     229 ILIDN----PKVLELARQHIAaLGRPDFSskIKLYTGEIp--------LFSHYQIESQIESAFQREVRLPSGGSIVIDST 296  Escherichia co...
WP_000123199 231 IRVDS----RLTYEALLEFTS-EYIPEMTskLEHYTGRQp--------IFDLFDVENEIQRALERKVELKSGGYLIIDQT 297  Shigella flexneri
WP_010924529 234 LIVSG----DEAWNTINEYVN-SVAPELVskLTKYESADgpdgqsapdVFTVHRIDEQLAKAMDRKVWLPSGGTLVIDRT 308  Mycobacterium ...
WP_010880813 211 IYVDN----GDVWGEIVEFFG----DSIKhkLRYVNTIDt--------LPGGITLNQLIDKLTSKTVWLKNGGFIVIEQT 274  Aquifex aeolicus
WP_010933910 289 IVANS----KSIYTETLNYIQ-WAAPDMVknVSLYEGKLp--------LFEGYGIAKDVESIFSRKVWLKSGGYIIIEHT 355  Chlorobaculum ...
WP_004596085 311 VVIQG----QEAYEDASKFMQdLLPSELAk-LKEHKNKTp--------IFTQFQVEEQLVKLYQPVVTLPSGGYIVINPT 377  Rickettsia pro...
KAI98019     229 ILIDS----PKIFEKAKEHIK-LVRPDFInrVKLYQGEVp--------LFSHYQIESQIESAFQREVRLPSGGSIVIDVT 295  Haemophilus in...
P45175       232 IRIDS----KLCFGEVKEFTD-EFMPELSdkLVLYSGNQp--------IFDVYGVENAIQTALDKRVNLKSGGYLIIEQT 298  Haemophilus in...
2VMK_A       297 EALTAIDINSARATR-GGd-IEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARI 374  Escherichia coli
P72656       290 EALTVIDVNSGSFTH-SAn-SRETVLWTNYEAATEIARQLKLRNIGGVIIIDFIDMDSHKDQLQLLEHFNRCLETDKARP 367  Synechocystis ...
WP_010725350 311 EAMHTIDVNSGRSTQ-LEngVEETLVQINLEAAEEIARQLRLRNIGGLVIIDFIDMKSRKNQRRVLERLKEHMKYDAARC 389  Chlamydia trac...
WP_010883592 314 EAMHTIDVNSGRSTQlESg-VEETLVQINLEAAEEIARQLRLRNVGGLVIIDFIDMKSRKNQRRVLERLKEHMKYDAARC 392  Chlamydia pneu...
KEO12422     297 EALTAIDINSARATR-GGd-IEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARI 374  Escherichia co...
WP_000123199 298 EAMTTVDINTGAFVG-HRn-LDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKT 375  Shigella flexneri
WP_010924529 309 EAMTVIDVNTGKFTGaGGn-LEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVLRRLTESLARDRTRH 387  Mycobacterium ...
WP_010880813 275 EALTSIDVNSGETCG-KS--LEETAYNVNLEALKEVAKQIKFRNLSGIIIVDLIDMKKEKTKESLLSEVKKIFEGEGLRI 351  Aquifex aeolicus
WP_010933910 356 EAMVVVDVNSGRYAA-KRe-QEENSLKTNLEAAREVVRQLRLRDIGGIIVVDFIDMMDPKNSKKVYDAMKAELRNDRAKS 433  Chlorobaculum ...
WP_004596085 378 EALISIDVNSGKSTS-EKn-IEETALKTNLEAAKEVAKQVKLRDLSGLIVVDFIDMSEAKNRKIIERSFKEFLSRDRARI 455  Rickettsia pro...
KAI98019     296 EALTAIDINSARSTR-GGd-IEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPIRHQREVENRIRDAVRPDRARI 373  Haemophilus in...
P45175       299 EAMTTIDINTGAFVG-HRn-LEETIFNTNIEATKAIAHELQLRNLGGIIIIDFIDMQTDEHRNRVLQSLCDALSKDRMKT 376  Haemophilus in...
2VMK_A       375 QISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSIL 424  Escherichia coli
P72656       368 QIAQLTELGLVELTRKRQGQNLYELFGQPCPECGGLGHLVELPGEKGFVS 417  Synechocystis sp. PCC 6803 substr. Kazusa
WP_010725350 390 TILSMSEFGLVEMTRQRNRESLMQTLFTTCPYCNGNAIIKTSESILIEIE 439  Chlamydia trachomatis
WP_010883592 393 TILSMSEFGLVEMTRQRNRESLMQTLFTLCPYCSGNAIIKTPESVVIEIE 442  Chlamydia pneumoniae
KEO12422     375 QISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSIL 424  Escherichia coli 8-415-05_S1_C2
WP_000123199 376 SVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIM 425  Shigella flexneri
WP_010924529 388 QVSEVTSLGLVQLTRKRLGTGLIEAFSTSCPNCSGRGILLHADPVDSAAA 437  Mycobacterium tuberculosis
WP_010880813 352 KIYGITKLGLLEMTKKWESESIYEVIGETCPHCQGKGFVKSKEFILHTLE 401  Aquifex aeolicus
WP_010933910 434 NILPLSDFGIMQITRERIRPSLMQRMGDQCPACGGTGVVQARFTTINQVE 483  Chlorobaculum tepidum
WP_004596085 456 QTGNISQFGLLEFSRQRLRSSFLETNSEVCFHCNGKGVIRASDANAMLIL 505  Rickettsia prowazekii
KAI98019     374 QISRISRFGLLEMSRQRLSPSLGESSHHICPRCQGTGKVRDNESLSLSIL 423  Haemophilus influenzae
P45175       377 NVNGFTQLGLVEMTRKRTRESLEHVLCDECPTCHGRGRVKTVETVCYEIM 426  Haemophilus influenzae Rd KW20
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