Conserved Protein Domain Family
Holin_2-3

?
pfam13272: Holin_2-3 
Putative 2/3 transmembrane domain holin
Holin_2-3 is a putative holins with 2 or 3 transmembrane segments. It consists of many proteobacterial proteins ranging in size from about 70 aas to 120 aas. They have 2 or 3 predicted TMSs. Although some are annotated as phage proteins or holins, none appears to be functionally characterized.
Statistics
?
PSSM-Id: 433075
Aligned: 15 rows
Threshold Bit Score: 84.3215
Created: 25-Mar-2022
Updated: 17-Oct-2022
Structure
?
Aligned Rows:
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Q7VLB5         13 LLSWVVSSLVLLIVIALVSPQQLPVVLYKLALVCMAAIIGYHLDRALFPYSSPGSYLAIN-------------WKvyfkh 79  [Haemophilus] ...
CAP44750       12 LWPWLLGALLTTTVVGVIAPHQLGLLIWSLSKLCLGAYLGYWIDRGIFCYARPGAVVEAAqaaarqgstdgiaWT----- 86 
Q6AMU7          6 LQKMVLISLVCLLLVALVAPYQLPLVGYKLGLVCLGACTFFWLDRIAFPYSRPGSYLLKP-------------WQevgdf 72  Desulfotalea p...
Q72D02         17 MGWCLALSVLLLGLVGLFSPQQLPVIIYKGSLLSLAGTGGYWLDRWAFPYARPDSYLVYE-------------WKdedef 83  Desulfovibrio ...
CAJ54036       20 I--CVILTVLLFLALVIFSPRQLPVIHYKFALCLLAGLAGYWLDRVLFPFANPSGYLCED-------------WKehing 84 
jgi:DvMF_0722  15 MLLCSLIAVALWLFLWHASPREALIVTYKVTLVMLAAVAAYWIDRWLFPYARPEGYLCEE-------------WRdrigs 81 
jgi:DvMF_1275  16 MGWCMALAVVLLLGVARFAPQNLPVIMYKGSLLTLASVGGYWLARWVFPYGRPDQWLTGD--------------Ravtla 81 
Q728A6         15 MLWCAFIALLFLLAVGCIAPQQLPVILYKASLILLAAFTGYWIDRWAFPYARPDSYLVSD-------------WRrqrgf 81  Desulfovibrio ...
jgi:Daes_2413   6 MTSIIIPALALLAVVALAAPQQLAVIAYKVALITIAGVAGYCLDRALFPYARPHEYIGPLrrlgptaq------------ 73 
Q6QIC8         10 LTSWLVAAIILVAAIALFSPQQLPVALYKLSLVSLAAVVAYWLDRGLFPYARPDSYLETD-------------WRhgpdg 76  Burkholderia v...
Q7VLB5         80 qhtknsdqakpeypvhkgyelIFALV-------VLRRALIVG-TVILGVTLGL 124 [Haemophilus] ducreyi
CAP44750       87 ---------------------VACWC-------MMRRAVIIA-AAVLALGLGV 110
Q6AMU7         73 iegqa------dykiaygyemVFALV-------CCRRAFMMSiGGSLGLALGL 112 Desulfotalea psychrophila
Q72D02         84 sdgve------dypvvencqrLFIAA-------SLRRAAVMA-VAMLAVGLGL 122 Desulfovibrio vulgaris str. Hildenborough
CAJ54036       85 cqtgra-----dypivieyqkSFCTA-------MLRQAAIVV-GTMLAVSLGL 124
jgi:DvMF_0722  82 gdwpdgv---ddfpvvtesktLFMVA-------CLRRVVLMG-AAMLAVGLGL 123
jgi:DvMF_1275  82 asagamlsermgvslpvgpgtVLAVAvgmacvsMICRALLIL-GAMLAVGLGL 133
Q728A6         82 vpcda------ndpiargyarIFAAA-------LVRRAIIMG-AAMLAVGLGL 120 Desulfovibrio vulgaris str. Hildenborough
jgi:Daes_2413  74 ----------------prlwvpcVVA-------QLRRAMIVA-AAMLAVGLGL 102
Q6QIC8         77 ltpea------dyrvakgyelVFAAA-------MLRRAVIVL-GVVVGVALGL 115 Burkholderia virus BcepMu
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap