Conserved Protein Domain Family
PRK05932

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PRK05932: PRK05932 
RNA polymerase factor sigma-54; Reviewed
Links
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Statistics
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PSSM-Id: 235648
Aligned: 393 rows
Threshold Bit Score: 389.939
Created: 9-Dec-2010
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
192359257   2 KQSLQLKLGQQLTMTP--QLQQAIRLLQLSTLDLQQEIQEALDSNPMLELEenyeggnetnydtgepdtsdyertlevaa 79 
166155699   1 MLHQHQTASVALCPAL--HLQQGLDMLQMPVAELATFVSQQITINPCFDLDs---------------------------- 50 
237803038   1 MLHQHQTASVALCPAL--HLQQGLDMLQMPVAELATFVSQQITINPCFDLDs---------------------------- 50 
15835513    1 MLHQHQTASVALCPAL--HIQQSLDMLQMPVAELSEFLSQQITINPCFDLDa---------------------------- 50 
15618680    1 MFQQKQKLSLKYLPSL--RMQQGLQMLQSPLTELSSYVVQEIIDNPFFDLSs---------------------------- 50 
15836304    1 MFQQKQKLSLKYLPSL--RMQQGLQMLQSPLTELSSYVVQEIIDNPFFDLSs---------------------------- 50 
16752270    1 --MFQQKQKLSLKYLPslRMQQGLQMLQSPLTELSSYVVQEIIDNPFFDLSs---------------------------- 50 
29840741    1 MFQQHQKLSQNYLPSL--RMQQGLQMLQSPITELASYVLQQIIHNPFFDLSs---------------------------- 50 
33242130    1 MFQQKQKLSLKYLPSL--RMQQGLQMLQSPLTELSSYVVQEIIDNPFFDLSs---------------------------- 50 
62185555    1 --MLQHHQKLSLHYLPslRMQQGLQILQSPITELSSYILQQIIHNPFFDISs---------------------------- 50 
192359257  80 dpaanttdqlsdnytsststdsysssesndyassngegfeaaaesdfdadsfgdsagDWSDSIPADLPVDTSWDDVYQAS 159
166155699  51 ---------------------------------------------------------LDSP-------PESFsffpise- 65 
237803038  51 ---------------------------------------------------------LDSP-------PESFsffpise- 65 
15835513   51 ---------------------------------------------------------LDDL-------PDTCsffpise- 65 
15618680   51 ---------------------------------------------------------LEEE----------EWSPCYRPT 63 
15836304   51 ---------------------------------------------------------LEEE----------EWSPCYRPT 63 
16752270   51 ---------------------------------------------------------LEEE----------EWSPCYRPT 63 
29840741   51 ---------------------------------------------------------LEDEEWSVCSSLPSV-------- 65 
33242130   51 ---------------------------------------------------------LEEEE----------WSPCYRPT 63 
62185555   51 ---------------------------------------------------------LEEEEWSTCSSFSSL-------- 65 
192359257 160 SSss---sSNYDNEDndFESrrattdSIYDHLTWQLNLTPMSDRDRLVAMAIIDAVEPSGMLSISIHEIYDGLAaeleeL 236
166155699  66 --------------------qhpfteTLSAYLLRQIDTNFASSQERTIAQYIVGNLSPEGLFLENPSLVAADLN-----V 120
237803038  66 --------------------qhpfteTLSAYLLRQIDTNFVSSQERTIGQYIVGNLSPEGLFLENPSLVAADLN-----V 120
15835513   66 --------------------hhpfteTLLSHLLHQIEVHFSLPQDRAIAQYIVGNLSPEGLFLEDPSLSASNLG-----V 120
15618680   64 NStfsylnQTPGPQE-----------SLYTRLLPQIEEAFSTAEERFIAHQIAGNLSDEGLFLRNPEDFAQELE-----L 127
15836304   64 NStfsylnQTPGPQE-----------SLYTRLLPQIEEAFSTAEERFIAHQIAGNLSDEGLFLRNPEDFAQELE-----L 127
16752270   64 NStfsylnQTPGPQE-----------SLYTRLLPQIEEAFSTAEERFIAHQIAGNLSDEGLFLRNPEDFAQELE-----L 127
29840741   66 ------------DAAysRPE------SLFSHLLTQVQQTFDRSEDLLIAQHIIGNLSDQGLFLSSTEELSLQLE-----M 122
33242130   64 NStf---sYLNQTPG--PQE------SLYTRLLPQIEEAFSTAEERFIAHQIAGNLSDEGLFLRNPEDFAQELE-----L 127
62185555   66 ------------DASysRPE------SLFSHLLTQVQQTFDRSEDLLIAQHIIGNLSDQGLFLSSPEELSLQLE-----V 122
192359257 237 EEDEVVAVQHRLQQFDPCGVCSQNLSECLLVQLQQfdpqTPfLEPAKLIVKQYLPLLGSRDYRQLMRRTKLKEAELSQAV 316
166155699 121 SEHLFHKVWQRIQQLHPLGVGAPSLQSYWVSLLQT----SP-HKEALAIIRNHFPRLARCDFTTIARKMHATTTEILTFL 195
237803038 121 SEHLFHKVWQRIQQLHPLGVGAPSLQSYWVSLLQT----SP-HKEALAIIRNHFPRLARCDFTTIARKMHATTTEILTFL 195
15835513  121 SDVLFQKIWLRIQQFHPLGIASSSLQSYWLSLLDP----SS-HKEALMIIRQHFNRLARCDFAGISKKIQLPIAKILVFL 195
15618680  128 PLEKIHKVWDTIQNLSPEGIASPSLQSYWMKLLRN----SS-HQQAYSIVRDCYPLMTNCEFAPIMKKFSLSLSELRNIL 202
15836304  128 PLEKIHKVWDTIQNLSPEGIASPSLQSYWMKLLRN----SS-HQQAYSIVRDCYPLMTNCEFAPIMKKFSLSLSELRNIL 202
16752270  128 PLEKIHKVWDTIQNLSPEGIASPSLQSYWMKLLRN----SS-HQQAYSIVRDCYPLMTNCEFAPIMKKFSLSLSELRNIL 202
29840741  123 PLETIHTVWETIQHFHPLGIASPSLQDYWLLHLEG----SA-HALAYKIIKEHYSLLINCDFLRIAKKCRCSPSDIRKVL 197
33242130  128 PLEKIHKVWDTIQNLSPEGIASPSLQSYWMKLLRN----SS-HQQAYSIVRDCYPLMTNCEFAPIMKKFSLSLSELRNIL 202
62185555  123 SLETIDKVWKTIQHFHPLGIASPSLQDYWLLHLEG----SP-HDLAYKIIKEHYSLLINCDFLRIAKKCHCSPSNLRYAL 197
192359257 317 -TLIQGLNPRPGDIIA-S-GDTEYVVPDVFVEKr-dSRWIVELNPDIAPRLRINSD----YASMvrraDsSSDNTFLKDN 388
166155699 196 rHAFASIPWCPAAGFSeTlHPPAPVLPDAYLSFsrnSSWDVSINKDCLPSIRLNDTvldiYPSLp-----REEKDHLSQQ 270
237803038 196 rHAFASIPWCPAAGFSeTlHPPAPALPDAYLSFsrnSSWDVSINKDCLPSIRLNNTvldiYPSLp-----REEKDHLSQQ 270
15835513  196 rQALASIPWCPAAGFPnSlKTPSPALPDAYLSFsheKSWEIFMNKDSLPAIRLNSTvlhiYHTLp-----RDDKDHLSQQ 270
15618680  203 kKALGSIPWCPAAACT-VkPMVSTPLPDIYLFYs-sGSWKIEVSTRGLPSIKLNKEtfhfYEHLp-----KEEQKNLSQQ 275
15836304  203 kKALGSIPWCPAAACT-VkPMVSTPLPDIYLFYs-sGSWKIEVSTRGLPSIKLNKEtfhfYEHLp-----KEEQKNLSQQ 275
16752270  203 kKALGSIPWCPAAACT-VkPMVSTPLPDIYLFYs-sGSWKIEVSTRGLPSIKLNKEtfhfYEHLp-----KEEQKNLSQQ 275
29840741  198 kTALAKIPWCPAEGYA-SlSHVQPALPDVYVTKk-hQIWEIQISSRGLPPIKLNSEvfhiYEQLp-----KEEKKNLTQQ 270
33242130  203 kKALGSIPWCPAAACT-VkPMVSTPLPDIYLFYs-sGSWKIEVSTRGLPSIKLNKEtfhfYEHLp-----KEEQKNLSQQ 275
62185555  198 kNALTTIPWCPAQGYA-SsSNIQPALPDVYVAKq-dRVWEIQISSQGLPPIKLNREvfhiYEQL----P-REEKKSLTQQ 270
192359257 389 LQEARWFLKSLQSRNETLLKVASCIVEKQRGFLEYGPEAMKPLVLHDIAEIVGMHESTISRVTTQKYMHTPQGIFELKYF 468
166155699 271 IRAAKQLLRNVKKREETLLAILRVLIPYQEEFLLKKRTSPKAFSVKQIARELSLHEATVCRAIDNKTLATPVGLLPMRSL 350
237803038 271 IRAAKQLLRNVKKREETLLAILRVLIPYQEEFLLKKRTSPKAFSVKQIARELSLHEATVCRAIDNKTLATPVGLLPMRSL 350
15835513  271 IRAAKQLLRNIKKREETLLAVLRVLIPYQEEFLLKKRSVPKAFSVKQLARELSLHETTICRAINNKTLATPIGLISMRSL 350
15618680  276 ILSAKWLIKNLRKREQTLLQVMETLLPKQEDFLLGKIPAPYPLGIKDLAEDLSFHESTIFRAIENKAVAAPIGIFPLKHL 355
15836304  276 ILSAKWLIKNLRKREQTLLQVMETLLPKQEDFLLGKIPAPYPLGIKDLAEDLSFHESTIFRAIENKAVAAPIGIFPLKHL 355
16752270  276 ILSAKWLIKNLRKREQTLLQVMETLLPKQEDFLLGKIPAPYPLGIKDLAEDLSFHESTIFRAIENKAVAAPIGIFPLKHL 355
29840741  271 ILSAKWLIKNLRKREQTLFSIVETILPHQESFLLGKSSSPKALSVKSLSEELSFHESTIFRAIENKTLAAPIGIIPLKQL 350
33242130  276 ILSAKWLIKNLRKREQTLLQVMETLLPKQEDFLLGKIPAPYPLGIKDLAEDLSFHESTIFRAIENKAVAAPIGIFPLKHL 355
62185555  271 ILSAKWLIKNLRKREQTLFSIVEKILPHQENFLLGKTSCPKPLSVKILSEELPYHESTIFRAIENKTLAGPIGIIPLKHL 350
192359257 469 FSSHVSTDSGGEC-SSTAIRAIIKKLVSAENpkKPLSDSKITELLAEQGIQVARRTIAKYRESLNIPPSNERKSL 542
166155699 351 FPQAV---GSCPDqSKATILHWIHQWISTEK--HPLSDAAISQKIIEKGIPCARRTVAKYRSQLNIPPAHQRKHL 420
237803038 351 FPQAV---GSCPDqSKATILHWIHQWISTEK--HPLSDAAISQKIIEKGIPCARRTVAKYRSQLNILPAHQRKHL 420
15835513  351 FPQAV---GACPDqSKATILHWIHQWISTEK--NPLSDEAISQKIIAKGIPCARRTVAKYRSQLNIPPAHQRKHV 420
15618680  356 FPRGI---HQDSShSKENVLQWIRQWIATEQ--TPLSDSVISDRITAKGIPCARRTVAKYRAQLKILPANKRKKL 425
15836304  356 FPRGI---HQDSShSKENVLQWIRQWIATEQ--TPLSDSVISDRITAKGIPCARRTVAKYRAQLKILPANKRKKL 425
16752270  356 FPRGI---HQDSShSKENVLQWIRQWIATEQ--TPLSDSVISDRITAKGIPCARRTVAKYRAQLKILPANKRKKL 425
29840741  351 FPRAA---GDNDSqSKETILQWIHEWIASET--TPLSDADISERISQQGIQCARRTVAKYRTQLKILPANKRKAY 420
33242130  356 FPRGIHQD--SSH-SKENVLQWIRQWIATEQ--TPLSDSVISDRITAKGIPCARRTVAKYRAQLKILPANKRKKL 425
62185555  351 FPRAV---SPSDAqSKETILQWIHQWVASET--IPLSDADISERISQQGIQCARRTVAKYRTQLKILPAHKRKVH 420
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