1RQ8,1JO0


Conserved Protein Domain Family
CRS1_YhbY

?
pfam01985: CRS1_YhbY 
CRS1 / YhbY (CRM) domain
Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly. GFP fused to a single-domain CRM protein from maize localizes to the nucleolus, suggesting that an analogous activity may have been retained in plants. A CRM domain containing protein in plant chloroplasts has been shown to function in group I and II intron splicing. In vitro experiments with an isolated maize CRM domain have shown it to have RNA binding activity. These and other results suggest that the CRM domain evolved in the context of ribosome function prior to the divergence of Archaea and Bacteria, that this function has been maintained in extant prokaryotes, and that the domain was recruited to serve as an RNA binding module during the evolution of plant genomes. YhbY has a fold similar to that of the C-terminal domain of translation initiation factor 3 (IF3C), which binds to 16S rRNA in the 30S ribosome.
Statistics
?
PSSM-Id: 460405
Aligned: 483 rows
Threshold Bit Score: 60.1047
Created: 21-Mar-2022
Updated: 17-Oct-2022
Structure
?
Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
1RQ8_A         2 LTGKQKRYLRSLAHNIDPIFQIGKGGINENMIKQIDDTLENRELIKVHVlqnnF---DD-KKELAETLSEATRSELVQVI 77  
Q9FFU1       263 lEFEETKEMRNRGLHSPALMKLTRNGVYVNVVGRVREEFETEEIVRLDC----ThvgMSdCKRIGVKLKEMVPCVPILFK 338  thale cress
ERN15076     527 LTLEEAKEMRKKGRKVPPICKLAKNGVYVDLVKNVKEAFEECELVRINC----QglnASdYKKIGAKLKDIVPCVLISFE 602 
XP_002535109 370 LTLEEASEMRRKGRKLIPICKLAKNGVYCNLVKEVREAFEECELVRIDC----QgvnGSdYRKVGAKLKELVPCLLISFE 445 
Q9SL79       361 LTRQEATNMRRKGRELMPICKLGKNGVYCDLVKNVKEAFEVCELVRIDC----QgmkGSdFRKIGAKLKDLVPCVLVSFE 436  thale cress
XP_003516485 357 LTLEKATEMRQKGRDLMPICKLGKNGVYWDLVTNIREAFEECELVRINC----QelnTSdYRRIGAKLKDLVPCALLSFE 432  soybean
XP_009389388 373 LTLEEATEMRKKGRQLPPICKLGKNGVYCKLVKQVREAFEACELVRINC----KdmnPHdCRKIGAKLRDLVPCVLLSFE 448 
ACG29341     261 LTFEETKELRNRGLNSPPLTKLTRNGVYVNVVDKVREAFKTVEVVRLDC----ThvgTTdCKKIGVKLRDLVPCIPILFK 336  Zea mays
XP_006838351 268 LTFEETKEMRNRGLNSPPIMRLTRNGVYVSVMEKVREAFKLQEVVRIDC----SgvdTSdCKKIGVKLRDMVPCVPLLFK 343 
XP_015068901 276 LSIEETKEMRKRGLAVPALTKLAKNGYYGSLVPMVRDAFLSEELVRIDC----KglqKSdYKKIGCKLRDLVPCILVTFD 351  Solanum pennellii
1RQ8_A        78 GSMIVIYR 85  
Q9FFU1       339 DEQIILWR 346  thale cress
ERN15076     603 NEHILMWR 610 
XP_002535109 446 HEHILMWR 453 
Q9SL79       437 NEQILIWR 444  thale cress
XP_003516485 433 NDHILMWR 440  soybean
XP_009389388 449 YEHILMWR 456 
ACG29341     337 DEQIILWR 344  Zea mays
XP_006838351 344 NGQIVLWR 351 
XP_015068901 352 KEQIVVWR 359  Solanum pennellii
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap