Conserved Protein Domain Family
IS66_TnpB

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NF033819: IS66_TnpB 
IS66 family insertion sequence element accessory protein TnpB
The IS66 family insertion sequence element encodes a DDE transposase TnpC, and two accessory proteins, TnpA and TnpB. It has been assumed that the TnpA, TnpB, and TnpC proteins are produced independently in appropriate amounts and form a complex, which acts as a transposase to promote the transposition of an IS66 family element. TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase.
Statistics
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PSSM-Id: 411392
Aligned: 63 rows
Threshold Bit Score: 108.339
Created: 11-Oct-2024
Updated: 3-Dec-2024
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_009960173  10 VHLLAGATDMRLGFEGLLALASGLLREDPLSGHLFVFCNKHRTRLKALYWDGSGLWVCAKRLEKGRFHWPqPPAQgaSrK 89  Verrucomicrobiu...
WP_011108244   3 YFLCPGKTDMRKGMNSLCGVVHDKMGYDVRLGDVFIFINRQRTTMKLLHAEDGGLVLYIKRLEEGTFRLPsYDKE--SkS 80  Bacteroides the...
WP_004312010  10 YYLYPYPTDMRKSFYTLSGIVTNQMGKNVRDGDAFIFINANCTCMKILHMEYGGLVIYHMRLEHGHFHLP-VINTeeGrI 88  eubacteria
WP_091910086  10 YWLYPFPTDMRKGFYTLSGLVTEGMGQDVRSGDVFIFLNRHCTSMKALHMEHGGLVIYYMKLEKGNFALPpLDEK--GkT 87  Proteiniphilum
WP_012477958  10 VYLHREPIDFRAGINSLAVLVQEVMELDPFAPSVFAFCNRRRDRVKLLFFDRSGFVMVLKKLTEDRFRWP-RRET--A-V 85  Hyphomicrobiales
WP_028755356  10 VYLHRDPIDFRAGINSLAILVEQSMGLSPFERAVFVFCNRRRTRMKLLFFERSGFVLVLKALSEDRFRWP-RREA--P-V 85  Rhizobium
WP_041205730  15 IYLYRAPIDFRKQAHGLAALVEQQLGHNPFTGALYAFTNRRRNKIKCLMWEDNGFVLYYKALAEEKFKWPsSADE----L 90  Pseudomonadota
WP_011629278  10 VYLCREPVDMRKSIDGLSLLVQEAMALNPFEQAVFVFCNRQRDKVKILAWERNGFVLWYKRLEQERFKWP-DRLQ--GdT 86  Alkalilimnicola...
WP_009687920  11 VYLYPKPVDFRKSIDGLTALVELDIKVAVFDPVLFVFLNKARNRIKVLYWERNGFCLWLKRLEAERFKTS-PDAT--DeA 87  Pseudomonas
WP_014610304  10 IWLCTTPVDMRKSFNGLSALVRNKLCHNPQSGQYFVFINARKTQMKVLYFESSGYCVWAKRLEQGQFPVK-PHPS--G-I 85  Gammaproteobact...
WP_009960173  90 VVLT--QAELTLLLAG 103 Verrucomicrobium spinosum
WP_011108244  81 YPMQ--WRDLVLMVEG 94  Bacteroides thetaiotaomicron
WP_004312010  89 KAIEtfWNDLVMMVQG 104 eubacteria
WP_091910086  88 HPFS--WQKLMLMVQG 101 Proteiniphilum
WP_012477958  86 VTLT--TEQLHWILDG 99  Hyphomicrobiales
WP_028755356  86 VMLD--TEQLRWLLDG 99  Rhizobium
WP_041205730  91 LSLS--SEQINWLLDG 104 Pseudomonadota
WP_011629278  87 LTLS--GQELNWLLDG 100 Alkalilimnicola ehrlichii
WP_009687920  88 IVLT--VQELNWLLDG 101 Pseudomonas
WP_014610304  86 QSLT--GCTLQMIVDG 99  Gammaproteobacteria
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