1HRU,1JCU


Conserved Protein Domain Family
Sua5_yciO_yrdC

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pfam01300: Sua5_yciO_yrdC 
Telomere recombination
This domain has been shown to bind preferentially to dsRNA. The domain is found in SUA5 as well as HypF and YrdC. It has also been shown to be required for telomere recombniation in yeast.
Statistics
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PSSM-Id: 460153
Aligned: 107 rows
Threshold Bit Score: 130.709
Created: 21-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1HRU_A        15 DVLNEERVIAYPTEAVFGVGCDPDSETAVXRLLELKQRPvDKGLILIAANYEQLKPYIddtXLTDVQRETIFSrwpgPVT 94  Escherichia coli
Q81BC7       215 dLLKKGKILAIKGLGGYHLVVDPMNHEAVKELRKRKKRD-EKPFALMSSQLDDVKNFAeitKNEETLLVSKER----PIV 289 Bacillus cereus...
Q97KV6       208 KKLKEGKIFAIKGLGGFQLVCDAENEEAIKKLRQKKNRQ-HKPFAVMVKDIETAKKYCsvnYKEEKLLKSKVK----PIV 282 Clostridium ace...
Q97TF8        60 KLLKSANILAIKDTGGFYLICNGKSRAAINTLRRRKMRQ-SKPFAVMMKDIYTVREFCevhSEEKKVLESSER----PIV 134 Clostridium ace...
WP_011986402 252 ELIKKGYIVAVKGIGGFHLVCDGKNKKAIENLRIRKKRP-HKPLAIMCKDLKIVKELCyvsKLEEQILEGTKK----PIL 326 Clostridium bot...
CAJ54761     220 EYIYKGKIIAMKGIGGFHLICDATNADVVNTLRYRKNRP-DKPLAVMVPNINIARQIAyisEVEIQKMQSPEC----PIV 294
Q6NIU7       214 DAISKGKIVAVKGLGGFHLMCDATNDEAVRTLRERKHRP-TKPLAVMIPDVEKARELArldADTTAVLTDPAH----PIV 288 Corynebacterium...
O28905       197 NALDSGKIIAIKGIGGYHIAC-LTEDDVVLRLRKLLNRP-QQPFAVMVRDLSSAERVAelsNEERAELLSPAR----PIV 270 Archaeoglobus f...
Q8TXL4       209 ELIEEGKIVAIKGIGGFHLACKTTEDEPVAKLRERLGRP-QQPFAVMSGSLDDVRTFAevdGTAEDLLTGPVR----PIV 283 Methanopyrus ka...
Q6M0X8       211 kFLEEGKILAIKGIGGTHLVCSINSDKSVLELRKRLNRP-TQAFAIMSRE-EYLDLFSkidENELNMIKSPKK----PIV 284 Methanococcus m...
1HRU_A        95 FVFP--APatTPR--WLtgRFDSLAVRVTDHPLVVALCQAYGkP-----------LVSTSANLSGLPPCRTVDEVRAQFg 159 Escherichia coli
Q81BC7       290 LLNKkdNEf-ISL--DVapNNNNYGVMLAYTPLHHLILRGNFiA-----------LIATSANVSDEPIVYKDGDAIEQLk 355 Bacillus cereus...
Q97KV6       283 ILNRsnYNk-IPK--VIapYQKTLGVMLPYTPLHYLLFSDDie-----------vLIMTSANAHGLPLEYKNESAIDKLg 348 Clostridium ace...
Q97TF8       135 ILDKkpSLn-LPN--NIspNLKSIGVMLPFSPISRLMLQKDld-----------vLIITKSS----NIELKNETAFKNLk 196 Clostridium ace...
WP_011986402 327 ILKKkaTNi-LPD--NIspFNKHLGVMLPYSPLHYLLFKEGLdI-----------IIATSGNVSGRPMEYKNCEAIENLk 392 Clostridium bot...
CAJ54761     295 ILKAi-PHs-LPK--NIapDVSTIGLMLPYTPLHHILCNTL--TkvaeleriipaLVMTSANVSGGTIIYNNDDALIRLn 368
Q6NIU7       289 LVPTtsKQr-LKLslLIapGLDYVGLVLPYTPLHTLLVDSp--------------VVATSANNSGEPLCWDNDVARENLt 353 Corynebacterium...
O28905       271 VVRKkl----pfE--AVapELDTIGIMLPYTPLHHLLFQELka----------dyLVMTSANLPGEPMYID-ESIMEKMe 333 Archaeoglobus f...
Q8TXL4       284 VLPKkePFp-LSE--LVapGLHTVGVMLPYTGLHHIMFERF--Lde-------paIVMTSANPPGEPMAIRNSDALRHLr 351 Methanopyrus ka...
Q6M0X8       285 ALKKneLYekYFS--EHvsNLNTIGVMLPYSGLHYLLFENTDqIa----------YIMTSANLPGLPMSIDNEQILEKLe 352 Methanococcus m...
1HRU_A       160 AAF-PVVPGEt-GGRLNPSEIRDAL--TGE------LFR 188 Escherichia coli
Q81BC7       356 GIAdYYLVHNreIFTRVDDSIVRGIdldDEvik-lqIIR 393 Bacillus cereus ATCC 14579
Q97KV6       349 NIAdYFLQHNrdINVPIDDSIVRVVngQEC------VIR 381 Clostridium acetobutylicum
Q97TF8       197 NIAdYFLIHNreISVPLKTPVVYLInhSKC------VLN 229 Clostridium acetobutylicum
WP_011986402 393 TIAdYFLIHNrdIHTPIDDSVVKVInkKES------LIR 425 Clostridium botulinum
CAJ54761     369 TITdFFLFHNrnIIVPVDDSVVCLRedNIGqspnwhFIR 407
Q6NIU7       354 HLAdVFLMHDrpIHIPVEDSVVVPSahGIV------PIR 386 Corynebacterium diphtheriae
O28905       334 --LdGFLVHNleIANRVDDSVVKYVggRRL------LIR 364 Archaeoglobus fulgidus
Q8TXL4       352 GIAdYYLVHDrrIAARCDDSVVRVLdgRPR------SLR 384 Methanopyrus kandleri
Q6M0X8       353 NIAdYFLLHNrkIVNRCDDSVLKEIngKME------LLR 385 Methanococcus maripaludis
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