6H3C,6GVW


Conserved Protein Domain Family
BRE

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cd23664: BRE 
BRCA1-A and BRISC complex subunit BRE
BRCA1-A and BRISC complex subunit BRE (also known as BRISC and BRCA1 A complex member 2; BRCC4; BRCC45) is a core component of both the BRCA1-A and BRISC complexes. BRCA1-A and BRISC are separate complexes with diverging function; they use the same core of subunits to perform very distinct biological tasks, and are found in all vertebrates. The BRCA1-A complex consists of BRE, Abraxas-1, BRCC36, MERIT40 and RAP80, and specifically recognizes 'Lys-63'-linked ubiquitinated histones H2A and H2AX at DNA lesion sites, leading to target the BRCA1-BARD1 heterodimer to sites of DNA damage at double-strand breaks (DSB)s. This complex also possesses deubiquitinase (DUB) activity that specifically removes 'Lys-63'-linked ubiquitin on histones H2A and H2AX. In BRCA1-A, two heteropentamers, composed of BRCC36, ABRAXAS, BRE and MERIT40, form an arc-shaped complex; the two half-arcs contact each other through BRCC36 and its scaffold partner ABRAXAS. BRCC36 is connected to this arc via the ABRAXAS MPN domain. BRE forms the central bridge between the ABRAXAS-BRCC36 MPN domain dimer and MERIT40. BRE's N-terminal ubiquitin-conjugating enzyme variants domain (UEV-N) binds the ABRAXAS MPN, and BRE's C-terminal UEV domain (UEV-C) holds MERIT40 at the extremity of the arc. Loss of BRE significantly impairs BRCA1-A function, resulting in DNA repair defects and loss of cancer suppression. The BRISC complex consists of BRE, BRCC36, MERIT40 and Abraxas 2, and serves cellular stress response and immune signaling functions; it specifically cleaves 'Lys-63'-linked polyubiquitin, leaving the last ubiquitin chain attached to its substrates. The BRISC core has the same 2-fold symmetrical arc shape and is structurally similar to BRCA1-A; however, the conformation of BRE UEV-C and MERIT40 differs markedly. BRE has different functionality in the BRCA1-A and BRISC complexes: in BRCA1, it is involved in RAP80 integration, BRCA1 sequestration and ubiquitin binding, while in BRISC, it is involved in dimerization, SHMT2 recruitment, DUB inhibition and ubiquitin binding. A BRISC complex (containing of BRE/BRCC45, BRCC36, MERIT40, and Abraxas 2/KIAA0157) has been found in insects (Camponotus floridanus) and shown to efficiently degrade 'Lys-63'-linked chains. Homologs of genes encoding components of BRCA1-A and BRISC complexes have been found in plant genomes, including for BRE/BRCC45; plant homologs of BRCC36 have been shown to be involved in DNA repair; BRCC36-Abraxas 2 complexes have been found in Arabidopsis.
Statistics
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PSSM-Id: 467821
Aligned: 40 rows
Threshold Bit Score: 401.954
Created: 8-Dec-2021
Updated: 27-Apr-2023
Structure
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Program:
Drawing:
Aligned Rows:
 
oligomer
Conserved site includes 110 residues -Click on image for an interactive view with Cn3D
Feature 1:oligomer interface [polypeptide binding site]
Evidence:
  • Structure:6GVW: Mus musculus BRE binds Abraxas 1, BRCC36, MERIT40, and RAP80 in the BRCA1-A complex, contacts at 4A
  • Comment:BRE forms the central bridge between the ABRAXAS-BRCC36 MPN domain dimer and MERIT40
  • Structure:6H3C: Human BRE binds Abraxas 2, BRCC36, MERIT40, and SHMT in the BRISC-SHMT2 complex, contacts at 4A
  • Comment:cancer-associated metabolic enzyme SHMT2 inhibits BRISC deubiquitination activity

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                ##          #    # #       ####             # #          # # # ##   ####
6H3C_C        33 LSPFISSVVRn--------gKVGLDAtNCLRITDLKSGCtslt---pgpnCDRFKLHIPYAGETLKWDIIFNAqyPELPP 101 human
6GVW_C        18 LSPFISSVVRn--------gKVGLDAtNCLRITDLKSGCtslt---pgpnCDRFKLHIPYAGETLKWDIIFNAqyPELPP 86  house mouse
XP_028396356   2 AAPQLSSEINkfaldlyendEIVTCT-DQIRIDKLRRGSnvit----qdnCDRFRILIPYGGTTLQWEVLFNSnePHFPP 76  Dendronephthya ...
XP_020900168   9 FNPKVSKLLKllf----tteNFGLKG-ERIQIKEPKSGCsypps--tarnLDRFKVYIPFAGHTLKWEVIFSH--PELPP 79  
XP_020607390   9 FHPDVAKFVEavl----nngGMGVCG-ELPKIIEPKTSLsfnytrgnvrsCDRFKVLIPYAGRSLKWEVIFNQaqPDFPP 83  Orbicella faveo...
XP_019858776   7 LHPVLVPLVEecf----rndKINGQG-GMMAITGVKSSLingp---tdklCDRFTVSVPYCGSHIKWEVIFNHkyPTEPP 78  Amphimedon quee...
KFM61137       6 FAPHIQTQLEeii----krgKIGICP-GPLKILNPMSSCpvwa---qgsgYDRFKLVIPYGGHSVDWDVIFQAgaPESPP 77  Stegodyphus mim...
KFM74755      24 LAPHIRNHVEvvm----rhpNFGLSQ-KSITFMNPKPSCsadh---ensqCDRFKISIPYAGMSVECLVIFQSsaPHCPP 95  Stegodyphus mim...
GBN97001      15 LAPHVRKHVEvll----aqpIIGLCH-REVEVLNPKPSFpsydk--ensnCDRFQIVIPYAGMRIECMVVFQSsgPECPP 87  Araneus ventric...
PRD28591      32 LAPHVRNHVEtml----fepNFGLCH-KEVQVMNPKPSFpcyda--kdsnCDRFEIIIPYAGVRIECMVIFQSsgPECPP 104 Trichonephila c...
Feature 1        #####      # ####  #  ## #                                                      
6H3C_C       102 DFIFGEd---aEFLPDPSaLQNLASWNPSNPECLLLVVKELVQQYHQFQCSRLRe-sSRLMFEYQTLLEe-pQYGENMEI 176 human
6GVW_C        87 DFIFGEd---aEFLPDPSaLHNLASWNPSNPECLLLVVKELVQQYHQFQCGRLRe-sSRLMFEYQTLLEe-pQYGENMEI 161 house mouse
XP_028396356  77 DIIFGDne--eDFEPNLEqMPSLHYWNPENGNSLTAVVKELLEQYKQYQFELVKnysQKLEFELESVRQl--DTLTSIEV 152 Dendronephthya ...
XP_020900168  80 DFIFGNqe--lDFVPDIEkMQSLIDWDHNNPQSFVTLIKELVQHYKHYQTELVKs-iPRMQIECDYLLGn--SDYSDYEV 154 
XP_020607390  84 DFIFGLhd--qDFVPNITeVKSLENWDASDPQSLVILINELVSQYKEHQRKQVEq-iPRIHFEYTTLAAd--NNYPEFEV 158 Orbicella faveo...
XP_019858776  79 DIVWSAdddinNFDPEIDnLQSLVDWNHKDNLSLSHLLEELLEEYRRHHKSLISs-hQRLNFEYNTLKEs-nMSLSQIDI 156 Amphimedon quee...
KFM61137      78 DFIFVD-----TFFVDLTdVKSLINYNSSKSDALLTVLKELLHHYQKYQAAHLQk-ySRVQFEYSTLTQqtnIKDEDIEV 151 Stegodyphus mim...
KFM74755      96 DFLFSDc----SFIIPLEnIKSLCDWNFENPDGLLLVVKELMYFYKEIQIAQLEn-yADLYIEYLNLIQlpnMSEDDIEV 170 Stegodyphus mim...
GBN97001      88 DFVFSDs---rFFVPIDQ-IEALCSWDVHKSDGLLKVMKEIMQFYKKKQIQELDr-yEHLSFEYLCLFQlqnFNEDDIEI 162 Araneus ventric...
PRD28591     105 DFVFSDs---rFFVPINQ-IESLCTWDVNKTDGLLCTMREIMQFYKKRQIQELDk-yEHLSFEYLCLFQlqnFHEDDIEI 179 Trichonephila c...
Feature 1                               #######        ##### #               ######## #     #  ##
6H3C_C       177 YAGKKnnwtgeFSARFLLKLPVDFSNIPTYllkdvnedPGEDVALLSVSFEDTea-tqVYPKLYLSPRIEHALgGSSALH 255 human
6GVW_C       162 YAGKKnnwtgeFSARFLLKLPVDFSNIPTYllkdvnedPGEDVALLSVSFEDTea-tqVYPKLYLSPRIEHALgGSSALH 240 house mouse
XP_028396356 153 YVHRDtqr-lqQQANFLIKLPMDLARLPPFiln---ehPGEYSITLFVSYEGQdg-stVTPKIFLSPSVEDAFgDTIIKY 227 Dendronephthya ...
XP_020900168 155 HFRREanqmydLEVNILIKIPVDVESIPPYllk---dnPGIDMACLLLTYISPdgkchVTPRLYLSPRLESALgGSSTLR 231 
XP_020607390 159 HVIRGqqn-tdTIVNFMIKLPVDLSEVPPYiik---dcPGEDMACLFVTYASLng-enVKPTLLLSPRVERAFgGASNLR 233 Orbicella faveo...
XP_019858776 157 HCQPPttkqsePVTTFYIRLEVDFSTLPAYlsk---dnPGASFAALTAVFHPPna-skVDISLYLSPSIERILgSAANIK 232 Amphimedon quee...
KFM61137     152 YVGEDk----dGPINFLIRLGVTFSGIPPVfr----neSGDDTALLLVTFNDPeg-tkITPKLCLPPKIEHALgSPLTWR 222 Stegodyphus mim...
KFM74755     171 FVSYNk----nNPITFLIQLHIELANILPNvfl---gnVEEETILLLVTFPLRnv-srSTQRLYLSANISNAFeLSPEFH 242 Stegodyphus mim...
GBN97001     163 LVPSDp----eSPVLFLIRLPADFRHILPDfyq--eesDLGDYPLLLVSFPNRds-srSCQRLYLTKKTQLILgMDESFQ 235 Araneus ventric...
PRD28591     180 FVPLEp----eNPVLFLIRLHVEFGKLLPDfyk--gdsDAQDFPLLLVSFPNRds-nrSNQRLYLSKNIQTLLgLEETFQ 252 Trichonephila c...
Feature 1        ###                        #  ## #   #  ### ##### ######## # # # #### # #### #  
6H3C_C       256 IPAFPgg--gCLIDYVPQVCHLLTNKVQYVIQGYhKRREYIAAFLSHFGtGVVEYDAEGFTKLTLLLMWKD-FCFLVHID 332 human
6GVW_C       241 IPAFPgg--gCLIDYVPQVCHLLTNKVQYVIQGYhKRREYIAAFLSHFGtGVVEYDAEGFTKLTLLLMWKD-FCFLVHID 317 house mouse
XP_028396356 228 PSWNDgd--kCLVSYILAVHHYFEGKVDEIIKSYeHRQSYIASFLSHFGtCVLEYDLESFKEISFLMEHDK-FTLILTIE 304 Dendronephthya ...
XP_020900168 232 IPQWGgqngsCLMDYLPVIHQLLKQKVTQVSSGYqKRKEYVSAFMSSFGgSVLEYDADTYYDISLLLNVQG-FFCIAHIS 310 
XP_020607390 234 IPHWGgv-ngCLLEYLPLIQELFAQKVEQVCQMFqKRREYIAAFLSAFGsSILEYDSEGFMKLSLLFQVQG-FFCIVHIE 311 Orbicella faveo...
XP_019858776 233 LPSWNse-dsYLMDYVPNVHKILQEKVEGIVQNFvRRKEYIAALLGLMGqSVLEYDTESYMKIAFLFESNQgFCFIAHLN 311 Amphimedon quee...
KFM61137     223 IPAFSsd--gCLMDYVPFVQESLQKRVEIVAYNFeKRMEYLFAFLEHFEgCFIEYDRDLASKATFLLEQND-FYFLFQVD 299 Stegodyphus mim...
KFM74755     243 LPPLLst--fSFKEYIPALEDALKKNAALVASAYeKRKECVSVLLSHFEnCLIEYDVLLYMKLTLLLELKG-FHFLLEID 319 Stegodyphus mim...
GBN97001     236 LPDEVnd--nYLTRYIIALEDELKTKAELAASRYeRRRMYFTQFLSHFHrCVVEYDVLYFSSMTLMLREDD-FHFILEIN 312 Araneus ventric...
PRD28591     253 LPDDVne--nYLTRYIMALEEELKTKAELAASRYdRRKMYFIKFLSHFDrCIIEYDIVFFRSMVILLREED-FYFIVEIN 329 Trichonephila c...
Feature 1                      ######      ##              #   #  #  ##  #        
6H3C_C       333 LPLFFPRDQPTLTFQSVYHFTnsgQLYSQAQKNYPYSPRWDgNEMAKRAKAYFKTFVPQFQEAAF 397 human
6GVW_C       318 LPLFFPRDQPTLTFQSVYHFTnsgQLYSQAQKNYPYSPRWDgNEMAKRAKAYFKTFVPQFQEAAF 382 house mouse
XP_028396356 305 IGKDFPEEQPVFKMKSIYNIFn-dEPYQAIDDRYPYSPRWStNEMASRARSYLIAAIPQFKVASI 368 Dendronephthya gigantea
XP_020900168 311 LSVGFPLDKPTIELQSIYHEIk-gVPYSITYREYPYSPRWSgELMSEAARTFFLEKIPEFKEASV 374 
XP_020607390 312 LDKNFPHEAPFFYLQSIYHEKn-nQPYEKLEADYPYSPRWSgDEMAERARLFLMEKIPAFKEASL 375 Orbicella faveolata
XP_019858776 312 LTEAFPSEVPILSLYSIYHKYd-gRPFQYILEGMPYSSHWDaEEKAWRMKTHIAQVIPKFMEICK 375 Amphimedon queenslandica
KFM61137     300 LPLNFPMNKPSFTFRSIYHSSf-eKPFSTTVINYPYNQGWCaETMLEKAIEFVQEYALVFQQNSV 363 Stegodyphus mimosarum
KFM74755     320 FPRNFPIGVPELIFRSVYHTYs-gAPTSVSIDSYSYSPNWSsHELLEEIVKFIHNYASLFQQDSA 383 Stegodyphus mimosarum
GBN97001     313 LPDDFPMGTPALVFRSIYHTFm-gDPIAVAVDNYPYSPTWSmQKVLEETVKFIEEYVHLFRQDDG 376 Araneus ventricosus
PRD28591     330 LPDDFPMGTPALVFRSIYHSYm-gDPIAVAIDSYPYSPAWSvHKILEETVKFIEEYAPLFRQDSS 393 Trichonephila clavipes

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