3DZU


Conserved Protein Domain Family
Nuc_recep-AF1

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pfam11825: Nuc_recep-AF1 
Nuclear/hormone receptor activator site AF-1
Nuclear receptors (NRs) are a family of ligand-inducible transcription factors, and, like other transcription factors, they contain a distinct DNA binding domain that allows for target gene recognition and several activation domains that possess the ability to activate transcription. One of these activation domains is at the N-terminal, although there are two distinct motifs within this domain, between residues 20-36 and between 74 and the end of this domain, which are the binding regions. One of the co-activators is TIF1beta, which appears to bind at the first motif.
Statistics
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PSSM-Id: 463363
Aligned: 18 rows
Threshold Bit Score: 72.9229
Created: 24-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3DZU_A        22 SSLTSPTGRGSMAAPSLHPSLGPGig------sPGQLHSPISTLSSPINGMGPPFSVISSPMGP--HSMSV-PTTPTLGF 92 
XP_022532283  57 SPLSSPTSHRGMHPSLLSPSSIGA---------SGSLHSPISTLSSPMNGLGSPFSVISSPMGP--HSM----ASPGMGY 121
2_pfamImport   1 SPLGSPTSHRGM-----HPSLLspts----mgpSGSLHSPISTLSSPMNGLASPFSVISSPMGPplHELTSvPSVLALTF 71 
XP_007243934  56 SPLSSPTGHRGMGPHPLHPSLLtpss---mgstPGHLHSPI-------NGLASPFPVISSPMGH--PSMTG-PSSTSMAF 122
XP_002933799  25 TSVSSSSNLAAMNSLDVHTGYMGNsm-----ngPRSMTTNMNSLCSPGNNIGPPYRVIASSMGP--HSL---PSPTILNF 94 
XP_012403075  25 tsMSPSPALATGKSPDSHSNYIEApv-----svPRTLASPLNAIASPLNALGSSYRVITSAIGP--HSLSL-ATSPGVNM 96 
XP_004027871  25 TSMSPSAALSTVKPMDSHPSYTDTpv-----saPRTLS----AVGTPLNALGSPYRVITSAMGP--PSGAL-AAPPGINL 92 
ADZ45552      33 LPTGSPVV-------EGPPSYLEPpg-----saARALPSPMGAVGSPVSALGSPYRVIASSLGS--HPVAL-SSAPGMNF 97 
XP_006640727  61 TSLSSPNSHRAMNTPTLHPSLMGSgispsslgsSGQLHSPISTLSSPMNGLGSPFSVISSPMGP--HSMSV-PSTPGMGF 137
XP_003222989   1 -----------MGAPSLHPPMGPlg-------sHAQLHSPISTLNSPINGMGPPFSVISSAMGT--HSISG-PS-PGLGF 58  green anole
3DZU_A        93 STG-SPQLSSpMNPVSSSEDIKPPLGLNGVLK-----VPAHPSGNM 132
XP_022532283 122 GPSvSPQLNSpMNSVSSSEDIKPPLGLNGVMK-----VPAQPSGTP 162
2_pfamImport  72 FTG-RFQLNSpMNSVSSTEDIKPPLGINGVMK-----VPAQPSGTS 111
XP_007243934 123 GPSlSPQLSSpMISVSSPEDIKPPLGLNGVMK-----VPAQPTGTS 163
XP_002933799  95 PGHeSPPFNL-MNNISCSEDIKPPPGLSNLGSpcmnnYSCNSPGAL 139
XP_012403075  97 VGPpSSQLNV-MNNVRSSDDVKPLPGIQGMGTm---sYPSTSPGSL 138
XP_004027871  93 VAPpSSQLNV-VNSVSSSEDIKPLPGLPGIGNm---nYPSTSPGSL 134
ADZ45552      98 VAHaSPQLNV-LNNVSSSEDVKPLPGLPGMGNm---nYPSTSPGSL 139
XP_006640727 138 GPSvSPQLNSpMNPVSSSEDIKPPLGLNGVMK-----VPAQPSGTP 178
XP_003222989  59 GTN-SPQLNSpMNPVSSTEDIKPPLGINGVLK-----VPVHPSSAM 98  green anole
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