2LTO,3PMT,2D9T,3PNW,5YJ8,3S6W


Conserved Protein Domain Family
Tudor_TDRD3

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cd20413: Tudor_TDRD3 
Tudor domain found in Tudor domain-containing protein 3 (TDRD3) and similar proteins
TDRD3 is a scaffolding protein that specifically recognizes and binds dimethylarginine-containing proteins. In the nucleus, it acts as a coactivator; it recognizes and binds asymmetric dimethylation on the core histone tails associated with transcriptional activation (H3R17me2a and H4R3me2a) and recruits proteins at these arginine-methylated loci. In the cytoplasm, it may play a role in the assembly and/or disassembly of mRNA stress granules and in the regulation of translation of target mRNAs by binding Arg/Gly-rich motifs (GAR) in dimethylarginine-containing proteins. TDRD3 contains one Tudor domain. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.
Statistics
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PSSM-Id: 410484
Aligned: 19 rows
Threshold Bit Score: 101.264
Created: 27-Oct-2006
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
peptide binding
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1:peptide binding site [polypeptide binding site]
Evidence:
  • Structure:2LTO; Homo sapiens TDRD3 in complex with DNA-directed RNA polymerase II subunit Rpb1 asymmetrically dimethylated CTD peptide, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                  ###    #                 #  # # #          
2LTO_A         4 WKPGDECFALYWEDNKFYRAEVEALHssgMTAVVKFIDYGNYEEVLLsNIKPI 56  human
NP_648724    732 WQKGDLCMAKYWDDGRYYEAEITGVSe--KTCVVFFMGYGNHEEVLKvDILPI 782 fruit fly
3S6W_A         2 WKPGDECFALYWEDNKFYRAEVEALHssgMTAVVKFIDYGNYEEVLLsNIKPI 54  human
Q9H7E2       556 WKPGDECFALYWEDNKFYRAEVEALHssgMTAVVKFIDYGNYEEVLLsNIKPI 608 human
Q6NYG6       640 WKAGDQCLALYWEDNKFYRARIDAVHpsgSTAVVVFSDYGNCEEVLLdSIKPL 692 zebrafish
XP_007891642 662 WRPGDPCLALYWEDNKFYRAVIKAVHpsgATAVVVFRGYGNYEEVLLrNIKPV 714 elephant shark
XP_018670423 770 WSEGSFCQAKYWEDYKFYKAKIMNIHpskSTAVVVFLEYGNYEEVQLkDLVPL 822 vase tunicate
XP_002611309 630 WRRNDHCLARYWEDGKFYPAMVTDVApngRTAVVLFTEYENYEEVEMfNIRPL 682 Florida lancelet
XP_006818801 581 WRNGDKCLAKYWEDKKFYPAIIHAVDtklPTAVVYFTEYGNYEEIFAsDIKPL 633 Saccoglossus kowalevskii
OWF45791     763 FKKGDPCLAKYWEDNKFYPAVVRALFqdlPTCIVLFPEYGNEEEVNLtDVKPL 815 Yesso scallop

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