3KAR,1F9U,4GKR,1F9T,1F9V,1F9W,4ETP,3T0Q,4H1G,2H58,1CZ7,2NCD,1CZ7,3L1C,1N6M,3U06,1SDM,3H4S


Conserved Protein Domain Family
KISc_C_terminal

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cd01366: KISc_C_terminal 
Click on image for an interactive view with Cn3D
Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins
Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.
Statistics
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PSSM-Id: 276817
Aligned: 41 rows
Threshold Bit Score: 472.078
Created: 1-Nov-2000
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
ATP bindingmicrotubule
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1:ATP binding site [chemical binding site]
Evidence:
  • Comment:interaction site for Mg ADP, ATP hydrolysis drives motor function
  • Structure:3KAR: Saccharomyces cerevisiae Kinesin-Like Protein Kar3 motor domain bound to Mg.ADP
  • Citation:PMID 9485302
  • Structure:1CZ7: Drosophila melanogaster Ncd Minus-End Directed Microtubule Motor Protein bound to Mg.ADP

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                #                                                                     
3KAR_A       1 MGNIRVYCRIRPALknle--nsdtSLINVNEfddnsgvQSMEVTkiqntaqvHEFKFDKIFDQQDTNVDVFKEVGQLVQS 78   baker's yeast
O81635     392 KGNIRVYCRVRPFLpgqes-gglsAVEDIDEg-----tITIRVPskygkagqKPFMFNKVFGPSATQEEVFSDMQPLVRS 465  thale cress
1SDM_A       4 KGKIRVYCRLRPLCekeii-akerNAIRSVDe------FTVEHLwkd--dkaKQHMYDRVFDGNATQDDVFEDTKYLVQS 74   potato
3H4S_A      12 KGKIRVYCRIRPLNekess-erekQMLTTVDe------FTVEHPwkd--dkrKQHIYDRVFDMRASQDDIFEDTKYLVQS 82   thale cress
AAC37475   887 KGKIRVYCRIRPLNekesserekqMLTTVDEf-----tVEHPWKdd----krKQHIYDRVFDMRASQDDIFEDTKYLVQS 957  thale cress
AAG13460   822 KGKIRVFCRLRPLSdkels-feekNIVCSPDef----tISHPWKde----ksKQHIYDRVFDANTSQEEVFEDTKYLVQS 892  maize
AAO72660   848 KGKIRVFCRLRPLNdkeli-ekdkNIVCSPDef----tVAHPWKdd----ksKQHIYDRVFDANTTQEEVFEDTKYLVQS 918  Japanese rice
AAF04841  1265 KGKIRVYCRARPLSgseke-rgnfSIIKRPDe------YTVDITstr---gqKEFQFDHIFMPENTQAEIFEDTDRLIQS 1334 purple urchin
P45962     243 NGNIRVFYRIRPQLaset---dnqKPVVVIDem---dnGVVHVSnttg-trkTSAGADKVIPTDFSQDQIFNEVSPIITS 315  roundworm
AAO17019   405 KGNIRVFCRCRPLSkdet--ssgyKCAVDFDgak--dgDIAIVNgga---akKTFKFDRVYMPTDNQADVYADASPLVTS 477  Japanese rice
Feature 1                  #  # ####                                                           
3KAR_A      79 SLDGYNVCIFAYGQTGSGKTFTMLNp------gDGIIPSTISHIFNWINKLktkgWDYKVNCEFIEIYNENIVDLLRsdn 152  baker's yeast
O81635     466 VLDGYNVCIFAYGQTGSGKTFTMTGpkelteesLGVNYRALADLFLLSNQRkd-tTSYEISVQMLEIYNEQVRDLLAqdg 544  thale cress
1SDM_A      75 AVDGYNVCIFAYGQTGSGKTFTIYGad----snPGLTPRAMSELFRIMKKDsn-kFSFSLKAYMVELYQDTLVDLLLpkq 149  potato
3H4S_A      83 AVDGYNVCIFAYGQTGSGKTFTIYGhe----snPGLTPRATKELFNILKRDsk-rFSFSLKAYMVELYQDTLVDLLLpks 157  thale cress
AAC37475   958 AVDGYNVCIFAYGQTGSGKTSTIYGhe----snPGLTPRATKELFNILKRDsk-rFSFSLKAYMVELYQDTLVDLLLpks 1032 thale cress
AAG13460   893 AVDGYNVCIFAYGQTGSGKTFTIYGse----nnPGLTPRATSELFRVIKRDgn-kYSFSLKAYMVELYQDNLVDLLLprn 967  maize
AAO72660   919 AVDGYNVCIFAYGQTGSGKTFTIYGse----nnPGLTPRATSELFRVIKRDgh-kYSFSLKAYMVELYQDNLVDLLLakn 993  Japanese rice
AAF04841  1335 AVDGYNVCIFAYGQTGSGKTFTMIGdke--qkfPGIAPRAFQKVYELIEENks-kFSFRVYTYMLELYNEKLIDLYNknk 1411 purple urchin
P45962     316 CIDGYNVCIFAYGHTGSGKTYTMDGpv----tmPGINQRAIMQLFETAKERtg-dIKYDIKVAMMEIYNEKIRDLLNts- 389  roundworm
AAO17019   478 VLDGYNVCIFAYGQTGTGKTFTMEGte----rnRGVNYRTLEELFKIAEERke-tVTYSISVSVLEVYNEQIRDLLAssp 552  Japanese rice
Feature 1                                                                                      
3KAR_A     153 nnkedtsigLKHEIRHDqetKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAkTG 232  baker's yeast
O81635     545 -------qtKRLEIRNNs-hNGINVPEASLVPVSSTDDVIQLMDLGHMNRAVSSTAMNDRSSRSHSCVTVHVQGRDLtSG 616  thale cress
1SDM_A     150 ------akrLKLDIKKDs-kGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLqTQ 222  potato
3H4S_A     158 ------arrLKLEIKKDs-kGMVFVENVTTIPISTLEELRMILERGSERRHVSGTNMNEESSRSHLILSVVIESIDLqTQ 230  thale cress
AAC37475  1033 ------arrLKLEIKKDs-tGMVFVENVTTIPISTLEELRMILERGSERRHVSGTNMNEESSRSHLILSVVIESIDLqTQ 1105 thale cress
AAG13460   968 ------akqLKLEIKKDs-kGVVTVENVTVVSISSIEELRAIISRGSERRHTAGTNMNDESSRSHLILSIIIESTNLqTQ 1040 maize
AAO72660   994 ------athQKLEIKKDs-kGVVTVENVTVVNISSFEELRAIILRGSERRHTAGTNMNVESSRSHLILSIIIESTNLqTQ 1066 Japanese rice
AAF04841  1412 ------gepPKLDIKKDk-kGMVYINGSVIQEAGNSKELYGLFEEGSANRHVASTKMNSESSRSHLVIGVIIESTNLgTG 1484 purple urchin
P45962     390 --------nTNLAIRQTe-eGRSSIPGLEEVSVNSAEEVTETLARGRKNKAVAATEANIESSRSHVIVRVLVSATNLiTK 460  roundworm
AAO17019   553 -------ssKKLEIKQAs-eGSHHVPGIVEAKVENIKEVWDVLQAGSNARAVGSNNVNEHSSRSHCMLCIMVRAENLmNG 624  Japanese rice
Feature 1                #                                                                     
3KAR_A     233 AHSYGTLNLVDLAGSERInvsqvvGDRLRETQNINKSLSCLGDVIHALGQpdstkRHIPFRNSKLTYLLQYSLT-GDSKT 311  baker's yeast
O81635     617 SILHGSMHLVDLAGSERVdksevtGDRLKEAQHINKSLSALGDVISSLSQk---tSHVPYRNSKLTQLLQDSLG-GSAKT 692  thale cress
1SDM_A     223 AIARGKLSFVDLAGSERVkksgsaGNQLKEAQSINKSLSALGDVISALSSg---nQHIPYRNHKLTMLMSDSLG-GNAKT 298  potato
3H4S_A     231 SAARGKLSFVDLAGSERVkksgsaGNQLKEAQSINKSLSALGDVIGALSSg---nQHIPYRNHKLTMLMSDSLG-GNAKT 306  thale cress
AAC37475  1106 SAARGKLSFVDLAGSERVkksgsaGCQLKEAQSINKSLSALGDVIGALSSg---nQHIPYRNHKLTMLMSDSLG-GNAKT 1181 thale cress
AAG13460  1041 SYARGKLSFVDLAGSERVkksgsaGKQLKEAQSINKSLSALADVIGALSSd---gQHIPYRNHKLTMLMSDSLG-GNAKT 1116 maize
AAO72660  1067 SYARGKLSFVDLAGSERVkksgsaGKQLKEAQSINKSLSALADVIGALSSd---gQHIPYRNHKLTMLMSDSLG-GNAKT 1142 Japanese rice
AAF04841  1485 AVVKGKLTLVDLAGSERSaktgatAEQLKEANSINKSLSALADVISALSSe---qSFIPYRNNKLTMLMQDSLG-GNAKT 1560 purple urchin
P45962     461 ATTVGRLNLVDLAGSERVsqtnatGQLLKEAQAINKSLSELGNVVLALRQn---qKHIPFRNCQLTRILEDSLN-GDSKT 536  roundworm
AAO17019   625 ECTRSKLWLVDLAGSERLaktdvqGERLKEAQNINRSLSALGDVISALATk---nSHIPYRNSKLTHLLQDSLElGPAKK 701  Japanese rice
Feature 1                                     
3KAR_A     312 LMFVNISPSssHINETLNSLRFASKVNSTRL 342  baker's yeast
O81635     693 LMFVHISPEpdTLGETISTLKFAERVGSVEL 723  thale cress
1SDM_A     299 LMFVNISPAesNLDETHNSLTYASRVRSIVN 329  potato
3H4S_A     307 LMFVNVSPAesNLDETYNSLLYASRVRTIVN 337  thale cress
AAC37475  1182 LMFVNVSPAesNLDETYNSLLYASRVRTIVN 1212 thale cress
AAG13460  1117 LMFVNVSPAesNLEETYNSLMYASRVRCIVN 1147 maize
AAO72660  1143 LMFVNVSPAesNLEETYNSLMYASRVRCIVN 1173 Japanese rice
AAF04841  1561 LMFVNISPAdyNAEETVISLTYASRVKLITN 1591 purple urchin
P45962     537 LVIVHLSPDakSLNESISSVNFAEKIGQVFT 567  roundworm
AAO17019   702 QVDTAELQKvkQMLERAKQDIRLKDDSLRKL 732  Japanese rice

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