3KAR,1BG2,1I5S,1II6,2GRY,3LRE,3B6U,3ZFD,4BN2,1T5C,3NWN,3BFN,3DC4,3PXN


Conserved Protein Domain Family
KISc

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cd00106: KISc 
Click on image for an interactive view with Cn3D
Kinesin motor domain
Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.
Statistics
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PSSM-Id: 276812
Aligned: 31 rows
Threshold Bit Score: 292.237
Created: 1-Nov-2000
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
ATP bindingmicrotubule
Conserved site includes 13 residues -Click on image for an interactive view with Cn3D
Feature 1:ATP binding site [chemical binding site]
Evidence:
  • Comment:interaction site for Mg ADP, ATP hydrolysis drives motor function
  • Structure:3KAR: Saccharomyces cerevisiae Kinesin-Like Protein Kar3 motor domain bound to Mg.ADP
  • Citation:PMID 9485302
  • Structure:1II6: Human Mitotic Kinesin Eg5 bound to Mg-ADP
  • Structure:1I5S: Mouse KIF1A Motor domain bound to Mg-ADP
  • Structure:1BG2: Human ubiquitous kinesin motor domain with bound Mg-ADP
  • Citation:PMID 8606779

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1            # ##                                                                      
3KAR_A       3 NIRVYCRIRPalknl-ensdtSLINVNefddn-sgvqSMEVtkiqn-------taqvHEFKFDKIFDQqDTNVDVFKEvg 73   baker's yeast
NP_501093    4 YIKCYGRVRPsarlg-apsesLFVGGRv--------vTIETdn------------gsKRYELHHIFDSsSSQEDVFGTva 62   roundworm
AAL56446    21 KITTVLRVRPttgidnyddsyLRIDQQd--------sEVTLippefr-----pgapaEKFKFDQVLGPeVKQPEVFKEtv 87   Oikopleura dioica
Q02241      25 PVGVYCRVRPlgfp----dqeCCIEVInn-------tTVQLhtpegyrlnrngdykeTQYSFKQVFGThTTQKELFDVva 93   human
NP_597219    4 NVRTYLRIKPqai------peDIVVGGd---------SVIVd--------------gSSFCFDRVFRG-STQQEVFQEis 53   Encephalitozoon ...
NP_611260   87 GPQVFLRLRPvkd------asKAYIVSee-------aNVLItsckvdstsnnvnrmeKHFGFTSIFDStVGQRDIYDTc- 152  fruit fly
EAA19086   272 QIKTCIRIKPsefve--neskNIITQRgs-------nKILIdygmkd-----kekkkIEFLVDKVFYEnSKQSDVWNSic 337  Plasmodium yoeli...
Q9D2Z8      25 PIQVVLRVRPm----------STVELRrg-------eQSALhcsgtrt---lqvspdVAFRFGAVLDGaRTQEDVFRAcg 84   house mouse
CAF06110    10 LFEVYLRLRPantvs--tsgdRFLDVDvpepsesapkHITLnppad------rrraiEKFAFTQVFEEdATQLDVFHCtg 81   Neurospora crassa
NP_491633  248 QIRVAVRVRPlikse-adassSAIEYPai-------dTIRInegs---------kpgIVVKFEKVFTPvFSQKEVFANve 310  roundworm
Feature 1                             #########                                                
3KAR_A      74 -----qLVQSSLD-GYNVCIFAYGQTGSGKTFTMlnp------------------------------------------- 104  baker's yeast
NP_501093   63 ----kkIVEDCVE-GYNGTVFAYGQTGSGKTHTMlgpcdsw--------------------------------------- 98   roundworm
AAL56446    88 ----snLVKAAFK-GQNACLFAYGASGSGKTHTMmgkp------------------------------------------ 120  Oikopleura dioica
Q02241      94 ----npLVNDLIH-GKNGLLFTYGVTGSGKTHTMtgsp------------------------------------------ 126  human
NP_597219   54 ----ksLLVECMQ-GYNCTLFAYGQTGSGKTYTIqgna------------------------------------------ 86   Encephalitozoon ...
NP_611260  153 ------VGPKIME-EECVTIMTYGTSGSGKTYTLlgdd------------------------------------------ 183  fruit fly
EAA19086   338 -----fSIDSIFN-FKNATIFAHGHTGTGKTYTMigpdimelikkrkkkyrytsrriypnellvntnslklsnnynsnnc 411  Plasmodium yoeli...
Q9D2Z8      85 v---krLGELALR-GFSCTVFTFGQTGSGKTYTLtgpppqgeg------------------------------------- 123  house mouse
CAF06110    82 vaglveGVLAPYGdGTDALLATLGVTGSGKTHTMlgtr------------------------------------------ 119  Neurospora crassa
NP_491633  311 -----eFIRSSLH-GYNVGLIAYGQTGSGKTHTMrggn------------------------------------------ 342  roundworm
Feature 1                                                                                      
3KAR_A         --------------------------------------------------------------------------------      baker's yeast
NP_501093      --------------------------------------------------------------------------------      roundworm
AAL56446       --------------------------------------------------------------------------------      Oikopleura dioica
Q02241         --------------------------------------------------------------------------------      human
NP_597219      --------------------------------------------------------------------------------      Encephalitozoon ...
NP_611260      --------------------------------------------------------------------------------      fruit fly
EAA19086   412 wydrkrscsqplfnlppkgnpltnrnssnfkrtfdisynffnfrnnpknnidcvnenysgkseyyktfseyrneykpnfk 491  Plasmodium yoeli...
Q9D2Z8         --------------------------------------------------------------------------------      house mouse
CAF06110       --------------------------------------------------------------------------------      Neurospora crassa
NP_491633      --------------------------------------------------------------------------------      roundworm
Feature 1                                                                                      
3KAR_A     105 -------------gdGIIPSTISHIFNWInklkt---------------------------------------------- 125  baker's yeast
NP_501093   99 ---------tdqelmGLIPRSVEHVFQHLdtkake--------------------------------------------- 124  roundworm
AAL56446   121 ------------sdpGVIPRTLDFLFKSIdgqidendrliasgcsaikegtsselrdlekarlevrq------------- 175  Oikopleura dioica
Q02241     127 ------------gegGLLPRCLDMIFNSIgsfqakryvfksndrnsmdiqcevdallerqkreamp-------------- 180  human
NP_597219   87 ------------hsiGIVQRSLSLLHRNAd-------------------------------------------------- 104  Encephalitozoon ...
NP_611260  184 ------------vraGIIPRALENIFTIYqdtvfrspklklingsivflqddaslkelqirkkl---------------- 235  fruit fly
EAA19086   492 ffkddiqlilnserkGIIPRACEEIMNRIsllrekssrefcysnekykngsnae-------------------------- 545  Plasmodium yoeli...
Q9D2Z8     124 -------vpvppslaGIMQRTFTWLLDRVqhld----------------------------------------------- 149  house mouse
CAF06110   120 ------------sqrGLTQMSLDLIYRSLghrvldpstypnleqsisasdpseanilpataylesvystdptisflrgsg 187  Neurospora crassa
NP_491633  343 -----------geeeGIIPRAAAFLFAESrkles---------------------------------------------- 365  roundworm
Feature 1                                                                                      
3KAR_A     126 ------------------------------------kgwdyKVNCEFIEIYNENIVDLLrsdnnnk------edtsiglK 163  baker's yeast
NP_501093  125 -----------------------------------cqkltfSVSVEFVELYNEVIYDLLna----------------knK 153  roundworm
AAL56446   176 ---lakgtskkgprrslmavpdepfqhsdgvdfeidesssyVIFASFYELYNEKVYDLLvpvpk----------dkkrvG 242  Oikopleura dioica
Q02241     181 -----npktssskrqvdpefadmitvqefckaeevdedsvyGVFVSYIEIYNNYIYDLLeevpfdp------ikpkppqS 249  human
NP_597219  105 ----------------------------------------lRISLSFVEIYNETMLDLFdp----------------eaI 128  Encephalitozoon ...
NP_611260  236 -------ldlcpdisahhqrlkqvidgdhmfetkastdvsvLVWVSFVEIYNELVYDLLaippkqdk----lgevprknL 304  fruit fly
EAA19086   546 -----------------dennnncedrgdkckendtlfpnfKVYASYMQLYNDRIFDLLnscie-----------sqpyL 597  Plasmodium yoeli...
Q9D2Z8     150 --------------------------------------spvTLRASYLEIYNEQVWDLLslg--------------sprP 177  house mouse
CAF06110   188 ngrstplqnesstprrfrpsalpqnpdishltipfdasaeyAIVISMYEVYNDRIFDLLsspvksaatkeyrrrpllfkP 267  Neurospora crassa
NP_491633  366 ------------------------------------lgwkfDFSLSFLEVYNNVAYDLLsd----------------raV 393  roundworm
Feature 1                                                                                      
3KAR_A     164 HEIrhdqetktttITNVTSCKLeSEEMVEIILKKANKLRSTAStasnehssrSHSIFIIHLSgsnakt---------gah 234  baker's yeast
NP_501093  154 VQLrdsg--kdiqLVGALSKNVdNPLDLMHLVQKGWQERSTGStamnaessrSHALLIIRIKtqertge-------lvke 224  roundworm
AAL56446   243 LSVkmdh--rgayVHKLRQIRInSPNDALTLLKAGRQGLTTGTtrlnadssrSHCLFTLRIAkkvnk----------naf 310  Oikopleura dioica
Q02241     250 KLLredkn-hnmyVAGCTEVEVkSTEEAFEVFWRGQKKRRIANthlnressrSHSVFNIKLVqapldadgdnvlqekeqi 328  human
NP_597219  129 LSIredpl-cgvvVDGLTIVDCdSYEKSMEMYSRGTRTRRTSStsmnkessrSHSVFTVYLKssgev-----------ms 196  Encephalitozoon ...
NP_611260  305 KIVgnkg---hvfIKGLTSVFVtSSEEALRLLRLGQQRSTYAStsvnanssrSHCVFTVDILkynrs----------git 371  fruit fly
EAA19086   598 STLkskfsnsttfVNGLLTVEVnSCEELIELLIDGTSNRACRItktnemstrSHSIFKIELRnvnnsk--------pehf 669  Plasmodium yoeli...
Q9D2Z8     178 LPVrwtka-rgfyVEQLRVVEFgSLEALMELLQMGLSRRRSSShtlnqassrSHALLTLHISrptsqqvpp--vdlgepp 254  house mouse
CAF06110   268 TELspd----rkvVAGLRKVVCgSLDQALMVLEAGLQERRVAGtesntqssrSHGFFVVEVKkrfslggqhtgwyggagw 343  Neurospora crassa
NP_491633  394 VQLrlnd--qtvsMIGLSEHTIsNVSDVARLLRVADGGRKTAAtkcnesssrSHAVYMWKITahqpst---------gis 462  roundworm
Feature 1              #                                                                       
3KAR_A     235 syGTLNLVDLAGSERinvsq-vvgdRLRETQNINKSLSCLGDVIHALGQpds------------------tkrHIPFRNS 295  baker's yeast
NP_501093  225 rsSILNLVDLAGSERqthtk-ssgdRLKEATNINSSLTVLGRCIRLLADpsk------------------akgHVPYRDS 285  roundworm
AAL56446   311 qvSNLAFCDLAGTERgkklgkvdskLLSESKTINKSLMQLRLVISDLQGlqkd-----------------gnkVVSFRNS 373  Oikopleura dioica
Q02241     329 tiSQLSLVDLAGSERtnrtr-aegnRLREAGNINQSLMTLRTCMDVLREnqmy----------------gtnkMVPYRDS 391  human
NP_597219  197 rsSRVCFVDLAGSERlrere-veetKMKETANINKSLLYLGKVINKLSNge--------------------egHIGYRES 255  Encephalitozoon ...
NP_611260  372 tqSSYKFCDLAGSERvnntg-tsglRLKEAKNINTSLMVLGRCLDAASTvqkk----------------knadIIPYRDS 434  fruit fly
EAA19086   670 ksCNLLLIDLAGNEKyvas--neklYTTEVCSINRSLSALSLCINELSKgn---------------------kNISYRNS 726  Plasmodium yoeli...
Q9D2Z8     255 vgGKLCFVDLAGSEKvaatg-sqgqLMLEANSINRSLLALGHCISLLLDpqr------------------kqnHIPFRDS 315  house mouse
CAF06110   344 tgNSLTIVDLAGSERardak-tvgqTLAEAGKINESLMYLGQCLQMQVAggkekvcplpnslmerganepqpnLGLIRRC 422  Neurospora crassa
NP_491633  463 tsCQLKLVDLAGSERakesg-vsgdQFKEMTNINQSLSILQMCISQQRSqk---------------------gHVSYRDS 520  roundworm
Feature 1                                                           
3KAR_A     296 KLTYLLQYSLTg----------dSKTLMFVNISPSssHINETLNSLRFASKVN 338  baker's yeast
NP_501093  286 HLTHILKNSLGg----------nSKTAVIVNMHPDrdFAQESNSTLMFAQSCT 328  roundworm
AAL56446   374 KLTQLMEPYLVgh---------sTTCIMIAVSSDPe-NYDDTQRSLDFASTAQ 416  Oikopleura dioica
Q02241     392 KLTHLFKNYFDg----------eGKVRMIVCVNPKaeDYEENLQVMRFAEVTQ 434  human
NP_597219  256 KLTFLLKDSLGg----------nCKLTVIGNVSLE--SRSDSINTMNFLQRSK 296  Encephalitozoon cuniculi GB-M1
NP_611260  435 KLTMLLQAALLg----------kEKLAMIVTVTPLdkYYEENLNVLNFASIAK 477  fruit fly
EAA19086   727 ILTRLLQDSIGg----------sNKTIFICTISPYvkNARDTLSSLKLVSKAK 769  Plasmodium yoelii yoelii
Q9D2Z8     316 KLTKLLADSLGg----------rGVTLMVACVSPSaqCLPETLSTLRYASRAQ 358  house mouse
CAF06110   423 KLTELLFTNSFptgnnqqqhrnpQKGIMIVTADPHg-DFNATSQILRYSALAK 474  Neurospora crassa
NP_491633  521 KLTQVLMDCLGrg---------nSKTMVVVNLNPCneQATESKRSIEFASKMR 564  roundworm

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