5D4W,4FCT,4D2Q,3J3T,1KSF,5KNE,4LJ4,4LJ8,4LJ7,5OFO,1QVR,4FCV,4CIU,3J3R,3J3S,5VJH,3PXI,6EMW,6EM8


Conserved Protein Domain Family
RecA-like_ClpB_Hsp104-like

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cd19499: RecA-like_ClpB_Hsp104-like 
Chaperone protein ClpB/Hsp104 subfamily
Bacterial Caseinolytic peptidase B (ClpB) and eukaryotic Heat shock protein 104 (Hsp104) are ATP-dependent molecular chaperones and essential proteins of the heat-shock response. ClpB/Hsp104 ATPases, in concert with the DnaK/Hsp70 chaperone system, disaggregate and reactivate aggregated proteins. This RecA-like_ClpB_Hsp104_like subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Statistics
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PSSM-Id: 410907
Aligned: 69 rows
Threshold Bit Score: 153.487
Created: 27-Nov-2017
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
ATP bindinghexamer
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1:ATP binding site [chemical binding site]
Evidence:
  • Structure:5D4W; Chaetomium thermophilum Hsp104 with bound ADP, contacts at 4A
  • Comment:contains Walker A and Walker B motifs

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                      #                                         # #####                  
5D4W_A        588 KLLHXEQALsk-iVVGQKEAVQSVSNAIRLQRSGLsnp------nqpPSFLFCGPSGTGKTLLTKALAEFlfd-dpkSXI 659  Chaetomium th...
YP_001637051   17 PLDLVEKRLre-qIFGQERAIESVIRVLNRSRFGFsagns---rrprATLLFLGPTGVGKTATARALAELlrp-dgsAFL 91   Chloroflexus ...
NP_600993     282 DGTSIKDKLde-kVMAQSLATTVVARRLQLVVADLhdks-----rplSNFLFTGPTGVGKTELVKQLARVlfgddtgRLI 355  Corynebacteri...
NP_600966     365 INTDDARDKle-tLFGQDHIIEPVLTAIKREQLGIfpr------tkpLSWVFAGSSGVGKTEMARILSRAin---ggDPI 434  Corynebacteri...
YP_500940     127 VINFYKEQMagskIIGQTDAKKQMSIDLYKHTSLEnn--------kpTVMLYYGPSGVGKTELAKEIAKKykg--niTRI 196  Staphylococcu...
NP_200579     608 LFKKLLKGMte-kVWWQNDAAAAVAATVSQCKLGNgkrrgv-lskgdVWLLFSGPDRVGKRKMVSALSSLvy---gtNPI 682  thale cress
Q6Z517        646 SFKRLLKGLte-kVSWQSDAASAIAAVVIQCRSGSgkrrnv-gtrgdMWLLFVGPDQAGKRKMVNALSELma---ntRPV 720  Japanese rice
NP_194764     569 LFKKLLKGLak-sVWWQHDAASSVAAAITECKHGNgks------kgdIWLMFTGPDRAGKSKMASALSDLvs---gsQPI 638  thale cress
NP_001077474  617 DFKSLREILsr-kVAWQTEAVNAISQIICGCKTDStrrn----qasgIWLALLGPDKVGKKKVAMTLSEVffg-gkvNYI 690  thale cress
NP_565689     627 DFKSLRELLsr-kVGFQNEAVNAISEIVCGYRDESrrrnnhvattsnVWLALLGPDKAGKKKVALALAEVfcg-gqdNFI 704  thale cress
Feature 1                                                        #                                
5D4W_A        660 RFDXseyqerhslsrx-igappgyvghdaGGQLTEALRRrPFSILLFDAVEKAAKEvlTVLLQLXDDGr-iTDGQGRVVD 737  Chaetomium th...
YP_001637051   92 KIDCslfsqghevsal-vgappsyvgrdqKPLLNPDIIEqENSVVLFDEIEKGQPElwNLLLQVMEDGeilLLNGGRRVS 170  Chloroflexus ...
NP_600993     356 RFDMsefale-------------ssldlfRSELTRRVADqGNAIVLLDEVEKADRAiaRLLLQVLDDGr-lSDDYNREVS 421  Corynebacteri...
NP_600966     435 IINGpeyispesitgligssdgyigsnskRAKPLDPLISnPRQVIVLDEFEKSHPHfqQLFMAALDTGt-mAMANGTTLN 513  Corynebacteri...
YP_500940     197 QFSMmqndesfn---------yifgdehaKVSLSKDLVDrETNVVLIDEFDKVLPIyyNVFYQMFDEGi--IEDANYKVD 265  Staphylococcu...
NP_200579     683 MIQLgsrqdagdg-------nssfrgktaLDKIAETVKRsPFSVILLEDIDEADMLvrGSIKQAMDRGr-iRDSHGREIS 754  thale cress
Q6Z517        721 VVNFggdsrlgrvgnd--gpnmgfwgktaLDRVTEAVRQnPFSVIVLEGIDQVDVVvhGKIKRAMETGr-lPDSRGREVS 797  Japanese rice
NP_194764     639 TISLgsssrmddg--------lnirgktaLDRFAEAVRRnPFAVIVLEDIDEADILlrNNVKIAIERGr-iCDSYGREVS 709  thale cress
NP_001077474  691 CVDFgaehcsld---------dkfrgktvVDYVTGELSRkPHSVVLLENVEKAEFPdqMRLSEAVSTGk-iRDLHGRVIS 760  thale cress
NP_565689     705 CVDFksqdsldd----------rfrgktvVDYIAGEVARrADSVVFIENVEKAEFPdqIRLSEAMRTGk-lRDSHGREIS 773  thale cress
Feature 1                                                                                         
5D4W_A        738 AKNCIVVXTSNlgaeylsranngkdgk----------------------------------------------------- 764  Chaetomium th...
YP_001637051  171 FQQSIVIFTTNvgakemvdfldrrtigfrtph------------------------------------------------ 202  Chloroflexus ...
NP_600993     422 FLNTYIVMTTNagseifetisnyatddtgd-------------------------------------------------- 451  Corynebacteri...
NP_600966     514 FSQAIIIATTNaardkigrdsfgfdsdnsgvl------------------------------------------------ 545  Corynebacteri...
YP_500940     266 VSNCIFILTSNfnsie---------------------------------------------------------------- 281  Staphylococcu...
NP_200579     755 LGNVIFVMTASwhfagtktsfldneaklrdlaseswrlrlcmrekfgkrraswlcsdeerlt-----kpkkehgsglsfd 829  thale cress
Q6Z517        798 LGNVIFVLTTNwvpeelkgsnvetllrgeermlestssswqlelsigdkqvkhradwlcddvrpaklakelssshglsld 877  Japanese rice
NP_194764     710 LGNVIIILTANsslgsaknvasidetrleslvnkgwelrlsvcnssktrkrkp-----------------------nwly 766  thale cress
NP_001077474  761 MKNVIVVVTSGiakdnatdhvikpvkfpeeqvlsarswklqiklgdatkfgvn------------------------krk 816  thale cress
NP_565689     774 MKNVIVVATISgsdkasdchvleepvkyseervlnaknwtlqikladtsnvnkngpnk-------------rrqeeaete 840  thale cress
Feature 1                                                               
5D4W_A        765 -----------------------idpttrelvxntlrnYFLPEFLNRISSVVIF 795  Chaetomium thermophilum
YP_001637051  203 ------------------kdveatgreiyqigfealqkVFQPEWINRLDEIIAF 238  Chloroflexus aurantiacus J-10-fl
NP_600993     452 --------------------graikdfvknihtsiknkGFPPELLGRVDEIVPF 485  Corynebacterium glutamicum ATCC 13032
NP_600966     546 -----------------gsaqaatdpraqerlkslmskDFPVELLNRFQNIFAF 582  Corynebacterium glutamicum ATCC 13032
YP_500940     282 ----------------------------------eaivNIGEPVFSRIDSCIKF 301  Staphylococcus aureus subsp. aureus NCT...
NP_200579     830 lnqaadtddgshntsdlttdndqdeqgfsgklslqcvpFAFHDMVSRVDDAVAF 883  thale cress
Q6Z517        878 lnlavgalddtegshnssdvsveqeqekgqlavkrstpAPGSDILELVDDAIVF 931  Japanese rice
NP_194764     767 sdndqtkqrkeicfdlneaaefdsssdvtvehdqedngNLVHKLVGLVDDAILF 820  thale cress
NP_001077474  817 yeletaqravkvqrsyldlnlpvnetefspdheaedrdAWFDEFIEKVDGKVTF 870  thale cress
NP_565689     841 vtelralksqrsfldlnlpvdeieanedeaytmsenteAWLEDFVEQVDGKVTF 894  thale cress

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