Conserved Protein Domain Family
7tmC_RAIG3_GPRC5C

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cd15277: 7tmC_RAIG3_GPRC5C 
retinoic acid-inducible orphan G-protein-coupled receptor 3; class C family of seven-transmembrane G protein-coupled receptors, group 5, member C
Retinoic acid-inducible G-protein-coupled receptors (RAIGs), also referred to as GPCR class C group 5, are a group consisting of four orphan receptors RAIG1 (GPRC5A), RAIG2 (GPRC5B), RAIG3 (GPRC5C), and RAIG4 (GPRC5D). Unlike other members of the class C GPCRs which contain a large N-terminal extracellular domain, RAIGs have a shorter N-terminus. Thus, it is unlikely that RAIGs bind an agonist at its N-terminus domain. Instead, the agonists may bind to the seven-transmembrane domain of these receptors. In addition, RAIG2 and RAIG3 contain a cleavable signal peptide whereas RAIG1 and RAIG4 do not. Although their expression is induced by retinoic acid (vitamin A analog), their biological function is not clearly understood. To date, no ligand is known for the members of RAIG family. Three receptor types (RAIG1-3) are found in vertebrates, while RAIG4 is only present in mammals. They show distinct tissue distribution with RAIG1 being primarily expressed in the lung, RAIG2 in the brain and placenta, RAIG3 in the brain, kidney and liver, and RAIG4 in the skin. The specific function of RAIG3 is unknown; however, this protein may play a role in mediating the effects of retinoic acid on embryogenesis, differentiation, and tumorigenesis through interaction with a G-protein signaling cascade.
Statistics
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PSSM-Id: 320404
Aligned: 7 rows
Threshold Bit Score: 352.5
Created: 2-Feb-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
  next features
Feature 1:putative allosteric modulator binding site [chemical binding site]
Evidence:
  • Comment:based on the binding of human mGluR1 receptor to a negative allosteric modulator FITM (contacts at 4A)

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                   #           ##  ##  #
Q9NQ84        48 AWGIVLEAVAGAGIVTTFVLTIILVASLPFvqdtKKRSLLGTQVFFLLGTLGLFCLVFACVVkpdFSTCASRRFLFGVLF 127 human
ABR13546      56 AWGIVLQAVTSAGIVSTFILTIVLVASTPFiqnkKKKSLLGTQVFFLLSTLGLFCLVFDMVVkkdFATCASRRFLFGLLF 135 African clawed ...
AFK11192      43 VWGIVLQALSGAGVLSCFVLALVLLASVPFiqegKKKSTVGTQLLFLFGTLGLFCLVFDFVVkmnFATCASRRFLFGLLF 122 ghost shark
EMC80645      43 AWGIVLEAVASLGVVTSFVLTIVLVASLPFvqdpQKKSLVATQVFFLLGTFGLFCLTFDFIVgpdFSTCTSRRFLFGVLF 122 domestic pigeon
AAI55366      46 AWGIILEALAGLGIICSLLLAVIFLALAPSvmrdERKGSLGINFMFLFGVFGLFSLVFAFIIgpnTAVCEVRRFLFGVLF 125 African clawed ...
NP_001103183  51 VWGVVVEAFAAAGLVASLILLIVLLASLPFinskNWRSSFGLHTVFLIFTFGLFALTFAFIVgknFATCASRRFLFGVLF 130 zebrafish
CAG00236      25 VWGIGVEAVAAAGVVTSFVLFIILVASLPFgtdqKRKAMAVLQAGLLTFTLGLFGLTFAFIVgrySTSCAARRFLFGVLF 104 spotted green p...
Feature 1                                                                                    #   
Q9NQ84       128 AICFSCLAAHVFALnflarknhgPRGWVIFTVALLLTLVEVIINTEWLIITLVRgsgeggpqgnssagwavasPCAIANM 207 human
ABR13546     136 AICFSCLWVHGVSLnylvrrntqPSGWWIFGLAVCLSLVEAIINTEWLIITIVRta---------------nnPCSIGND 200 African clawed ...
AFK11192     123 AVCFSCLLTHALRLnflsrknsgPNGWRVMGLALTLSLVEAIINTEWLVITILRnnatss--------pvlgdPCDIANM 194 ghost shark
EMC80645     123 GICFSCLLAHAVALnflarrnrgPRGWVTLAVALLLALVEVIINAEWLIITVARregg------------spdPCQLADA 190 domestic pigeon
AAI55366     126 ALCFASLVAHSVRLnylalhnhgPGGGLIFLLATGLFLVEAVINAEWLLITNVRhnlpsa--------isighPCNIDNQ 197 African clawed ...
NP_001103183 131 AGCFSCLLMQAVRLnilarrnsgPRGWVWCLGALGLWLVEVVINTEWLIITIVRypvnitgt----iapvlaiPCNIANQ 206 zebrafish
CAG00236     105 AGCLACLMMHGLWLlllg-rlrrPRSWMLCLGALAVWLVEVIINTEWLIITLVRgpagsv--------dtpdfSCSIANL 175 spotted green p...
Feature 1         #  ##  #                                   #  ##  #   #             ##  #  #   
Q9NQ84       208 DFVMALIYVMLLLLGAFLGAWPALCGRYkrWRKHGVFVLLTTATSVAIWVVWIVMYTYGNkqh-nsPTWDDPTLAIALAA 286 human
ABR13546     201 DFAMALIYVMFLILAGFITAWPALCGRYghWRKHAIFILLTLFLSISIWIVWIVMYVYGNvqvgkpLYWDDPTLAIALVS 280 African clawed ...
AFK11192     195 DFAMALIYVMVLMALTLVLGFTSQWGSFkhWKKHGVFILVTIWLSVAIWVAWITMYVYGNeal-grEGWDDPTLGIALVA 273 ghost shark
EMC80645     191 DFVMALIYVMFLLVAAFSTAWPALCGHYrrWHKHSAFILATTGLSMAIWVAWMAMYLYGNqrvgekPVWDDPTLAIALVS 270 domestic pigeon
AAI55366     198 DFVTSLVYVMFLILAALIIPCPVLCGHYlpWKRHGKYIVVTAFLSLSIWVIWIVMYLYGNdkl-gqRYWDDPVLAIALVS 276 African clawed ...
NP_001103183 207 DFVMALIYVLNLLLAVVVASVPIMAGKHkqWRKDGALILVTGLLSVGIWVAWIVMYVSGNakn-ggPTWDDPTLAIALVS 285 zebrafish
CAG00236     176 DFVMSLIYVMVLLLAAVLMPFPALAHKP--WRQDAAFILTTGVSSMVIWIAWILMYAHGNqvv-gnPSWDDPTLAVAVVT 252 spotted green p...
Feature 1        #                  
Q9NQ84       287 NAWAFVLFYVIPEVSQVTK 305 human
ABR13546     281 NGWAFIFFYIIPEISQLTK 299 African clawed frog
AFK11192     274 NAWVFLFFYIVPEICQVTK 292 ghost shark
EMC80645     271 NACTFLLLYIIPEVTHMTR 289 domestic pigeon
AAI55366     277 NGWVFIFFYFIPELLEMTR 295 African clawed frog
NP_001103183 286 NAWVFLLLHTVPAVCSLSE 304 zebrafish
CAG00236     253 NAWVFLFFYIVPEICLLTK 271 spotted green pufferfish

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