Conserved Protein Domain Family
NusG_myco

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TIGR01956: NusG_myco 
NusG family protein
This model represents a family of Mycoplasma proteins orthologous to the bacterial transcription termination/antitermination factor NusG. These sequences from Mycoplasma are notably diverged (long branches in a Neighbor-joining phylogenetic tree) from the bacterial species. And although NusA and ribosomal protein S10 (NusE) appear to be present, NusB may be absent in Mycoplasmas calling into question whether these species have a functional Nus system including this family as a member.
Statistics
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PSSM-Id: 273895
Aligned: 5 rows
Threshold Bit Score: 183.24
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
BAC44675      19 KWYIVTSInGNEDTVYKNIEDKVRAYDLGNVVQEMRLLKTREITIEVFDPIn--NPPPSRFRNTKSITWETLP---GGRY 93  Mycoplasma pene...
P75049         9 QWYVAPVS-VKDEAVVRNLKAKVKALGFDNEILDVRVLKEREVIEEVFSLKs--GKLPRSLKNTAFTKWFVLD---EDRY 82  Mycoplasma pneu...
AAF36753       8 QWYIATTTnGNEDSVIKTLKAKVRALHFEDQILDCKVIKFRSVEETIFDSNnptHNIPATMRNSTYIKWVTVD---NGVY 84  Mycoplasma gall...
AAF30995      25 QWYIVTVVsGNEQKVIENIKDKLNGYGYGDKLSDLKIIKEKIKEVKIYEPS----EAPRSMKNRANTKWETIVvdgATKY 100 Ureaplasma parv...
WP_010924986   5 NWYMISTIpNKEKEVIEAIKNKVVSENLEAYFSDFKIFWESRISAKELEKK----QAGDSYK---T-----------TKK 66  Mycoplasma pulm...
BAC44675      94 KKTRIREINRFPGYIYIKMIMEDDAWYVIRNTFGVTGFVGSSGKGAKPIPMSdIEVAnlfnPEMNQDIIINKTSDVFVEQ 173 Mycoplasma pene...
P75049        83 LKVKISEKNLLGRYIYIKMIYSEDAWRIIRNFPGITGIVGSSGRGALPTPLDqADADn--lEQMLKGISVNPKKRVLVTN 160 Mycoplasma pneu...
AAF36753      85 KKYKITDTNKYPGYIYIKMEMNEAAWFAVRNTVNITGIVGSSGKGAKPIPIS-SSEE----LDLLNGESFDQNYRIVITP 159 Mycoplasma gall...
AAF30995     101 RCTKIKEGNKFNGYIFLKAEMTDQIWFLIRNTQMVTGLVGSSGKNVKPIPVPe--------DKILKLIADNDAKRALISL 172 Ureaplasma parv...
WP_010924986  67 --------NMYNGYIFIEMVITNETWFLVRNTENVSGLVGSHGLGAWPTPISk--------LKFKKMIEEETKK------ 124 Mycoplasma pulm...
BAC44675     174 TVSKPREAEKriefldsgnnLVDKDGFFNSNLNQENKGEEASSESTENVEssnveevsvsmdqstnvevdtnvenqylsn 253 Mycoplasma pene...
P75049       161 TAIVEMDADK----------FDEKCQYILKHKQVKPEAIAQVNESGEIIDtnqfaqalmeankaeqdewnedv------- 223 Mycoplasma pneu...
AAF36753     160 NAIIEMDRNL----------FNERGELILDENAAKTIVHKKKSDSADKYG------------------------------ 199 Mycoplasma gall...
AAF30995     173 NEKVDHEENI------------------------------------E--------------------------------- 183 Ureaplasma parv...
WP_010924986 125 ------EE------------------------------------------------------------------------ 126 Mycoplasma pulm...
BAC44675     254 hdgeveevtinedvdnkqeeeteeevELFHKGNSDSKSPLFAVGNTVEILVESMQG--YEGVIESIDLE-KDKAKVLVDI 330 Mycoplasma pene...
P75049       224 ----aivkseankvdpsvlipylgkyEIVEGDTKVDQLQQFSVGNLVEVHLTGAIH--IQGQIKALYQGtINKAVVEVEL 297 Mycoplasma pneu...
AAF36753     200 --------------------------DMSTEKEQVDEAIELKVGHMVDINSGDYSG--LSGQISRIID--NDEYIVDVQI 249 Mycoplasma gall...
AAF30995     184 ----------------------------VIELHEDENFTNFEVDQEVKIIADTFFG--EIAKIAKIDQN-KKIATVEFEF 232 Ureaplasma parv...
WP_010924986 127 ------------------------------EFQLSLNLSKFREGLFVKIVDGPFKNdeIVYKIKKTNHE-KKYSILEIES 175 Mycoplasma pulm...
BAC44675     331 LGKETIVDVHFSEIRK 346 Mycoplasma penetrans HF-2
P75049       298 TTKTQLINLPLENLSF 313 Mycoplasma pneumoniae M129
AAF36753     250 LGKLVSVKLNKKQLKL 265 Mycoplasma gallisepticum
AAF30995     233 FGRINTLDLNFNDIQL 248 Ureaplasma parvum serovar 3 str. ATCC 700970
WP_010924986 176 LGKSVDTQIDHKHLKL 191 Mycoplasma pulmonis
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