6G57,6QB7,6QZL,6M8S


Conserved Protein Domain Family
H1_KCTD12-like

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cd22204: H1_KCTD12-like 
H1 domain found in potassium channel tetramerization domain-containing proteins
The H1 domain is found in potassium channel tetramerization domain-containing proteins such as KCTD8, KCTD12 (also called predominantly fetal expressed T1 domain/Pfetin), KCTD12b, and KCTD16. They serve as auxiliary gamma-aminobutyric acid type B (GABA-B) receptor subunits that constitute receptor subtypes with distinct functional properties. KCTD12 and -12b generate desensitizing receptor responses while KCTD8 and -16 generate largely non-desensitizing receptor responses. They control GABA-B signaling and regulate the rise time and duration of G protein-coupled inwardly rectifying potassium (GIRK) currents, as well as enhance receptor expression levels. KCTD12 regulates agonist potency and kinetics of GABA-B receptor signaling. It promotes tumorigenesis by facilitating CDC25B/CDK1/Aurora A-dependent G2/M transition. KCTD16 interacts with amyloid beta precursor protein (APP), a type I transmembrane protein involved in a variety of cellular processes such as cell adhesion and axon guidance. Members of this family consist of an N-terminal BTB domain followed by a region called the H1 domain. The BTB domain mediates interaction with the receptor. The C-terminal H1 domain, which possesses a beta-propeller-like fold, engages in interactions with G-protein beta-gamma subunits and is responsible for desensitization. This model corresponds to the H1 domain.
Statistics
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PSSM-Id: 409026
Aligned: 31 rows
Threshold Bit Score: 154.281
Created: 17-Aug-2020
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 36 residues -Click on image for an interactive view with Cn3D
Feature 1:pentamer interface [polypeptide binding site]
Evidence:
  • Structure:6QB7; Homo sapiens KCTD16 H1 domain forms a pentamer; contacts at 4A
  • Structure:6QZL; Homo sapiens KCTD12 H1 domain forms a pentamer; contacts at 4A
  • Structure:6M8S: Each H1 domain of human KCTD12 interacts with 2 other H1 domains in the homopentamer; contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1          ## #   #  #           # ###     # ##                #           # ##      # ## 
6G57_A          8 SGFLTLGYRGSYTtvrd---nqaDAKFRRVARIMVCGRIALAKEVFGdTLNESRDPDRq---PEKYTSRFYLKFtYLEQA 81   human
6QB7_A         40 WGFITVGYRGSCTlgre---gqaDAKFRRVPRILVCGRISLAKEVFGeTLNESRDPDRa---PERYTSRFYLKFkHLERA 113  human
KRZ13563      406 SGYITLSYRVAFTsmpq---sfvEGGFRKLNRISVCGKVCLCREVFQeMLNESRDPNCe--sDNKYTTRMFLNHcSLEHA 480  Trichinella z...
KFD65533      466 DNYITLGHMAGFTlarp---gqpDAVFRKISRITVCGKVSSCREAFGnYLNESRDPNCe--vANHYTSRMFLKHnILELA 540  pig whipworm
XP_024503667  102 MNTITVAYHGTLMfgkq--glscDVNFRKIMRILICGKTNICREVFGdTLNETRYGCGm--vEENYTSRFYLKHtYLEQA 177  Strongyloides...
KHN76664      116 SNTITLAYHGTLSfgiq--gftaDVNFRKISRIIVSGKVAICRQIFGeSLNEARDVGIe--nEDRYTSRFFLKHsSLEQA 191  dog roundworm
PFX17623     1093 FGYITLHIRGTYAfgrt---gqaDVTFRKLQRIEVSGRVSLCREVFGeTLNETRDSNPe---GNRYTNRFYLKHnHIERA 1166 Stylophora pi...
NP_001361860   88 PSTISISCHAALStgr----inpEVTFRKVLRIVVSGKVIMCRAVFGdSLNECRDGGGtdfeMDRYTSRFFLKHsNLEKA 163  Caenorhabditi...
XP_028411024  144 SGHISLHVKASFStkigrnaqqgDHPFRKIQRIFVCGKVSLCQEVFEaDLNETRESLQs---TSRYTSRFFLRHnQLEKA 220  Dendronephthy...
XP_002112873  116 KGILSLSYRGTYAfgrd---glaDVKFRKIHRILVCGNVTLTREVFEdTLNETRDPDRs---DNSYSSRFYLKHgHLEKA 189  Trichoplax ad...
Feature 1         ##  #     # ########                # #  ## #  
6G57_A         82 FDRLSEAgFHMVACNSSGTAAfvn-----qyrDDKIWSSYTEYIFFR 123  human
6QB7_A        114 FDMLSECgFHMVACNSSVTASfin-----qytDDKIWSSYTEYVFYR 155  human
KRZ13563      481 FDRLAEKgFRLVCCNTAMPTVgtdhhsnsfeiEETRWNHQVEHVFVR 527  Trichinella zimbabwensis
KFD65533      541 FDQLALHgYRVLSVCSSVPWPllpe----lhmEEYDWSHYVEHVFGK 583  pig whipworm
XP_024503667  178 FDCLMFNgFKFVSASTMTPQGmpda----ryhDDHRFMHYNQFVFQR 220  Strongyloides ratti
KHN76664      192 FDILAANgFKIMAATSHSPSAftea----rcnEEECYMHYTQFVFIR 234  dog roundworm
PFX17623     1167 FKRLKDSdFDLVSSSGGKSGLsads----tksDEDKWDHFSIHVFVR 1209 Stylophora pistillata
NP_001361860  164 FDQLASSgYRLIHSNTFAPSEmpkh----aakDDSQFIHHSQFVFHR 206  Caenorhabditis elegans
XP_028411024  221 FDQLRDHgFRLINGDGDGVPSlcsk---kntrWDEDWSHFTILVFFR 264  Dendronephthya gigantea
XP_002112873  190 FDLLAEKgFDLIASHAGGAGHdg-------esDETKWNHFIEYIFQR 229  Trichoplax adhaerens

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