Conserved Protein Domain Family
Sig70-cyanoRpoD
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TIGR02997: Sig70-cyanoRpoD 
RNA polymerase sigma factor, cyanobacterial RpoD-like family
This family includes a number of closely related sigma-70 (TIGR02937) factors in the cyanobacteria. All appear most closely related to the essential sigma-70 factor RpoD, and some score above trusted to the RpoD C-terminal domain model (TIGR02393).
Links
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Statistics
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PSSM-Id: 274382
Aligned: 22 rows
Threshold Bit Score: 434.366
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
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Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
CAE21243      11 DLVRSYLRDIGRVPLLSHEQEITLGRQVQ--------------------ELM---------------------SLEQLES 49  Prochlorococcus...
AAQ00835      19 DLVRSYLRDIGRVPLLTNEQEITLGRQVQ--------------------ELI---------------------SLEKLER 57  Prochlorococcus...
WP_011126980  23 DLVRSYLRDIGRVPLLTHEQEITLGRQVQ--------------------DLM---------------------DIEAMQT 61  Synechococcus s...
WP_010993943  23 DAVSIYLHKIGRVPLLSHEQEIFFAQQVQ--------------------QMM---------------------VMFTAKE 61  Nostoc sp. PCC ...
WP_010872341   8 DSVRAYLREIGRVPLLTHEEEIVYAKQIQ--------------------QVV---------------------SLNEIKK 46  Synechocystis s...
WP_010993936  13 DIVRNYLQDIVRVPLLTHEEEIVYSKQVQ--------------------QMM---------------------VLQKKKE 51  Nostoc sp. PCC ...
WP_010999734   7 DLVRIYLQEIGQFPLLTSDQEITYARLVQ--------------------QMI---------------------ALQEQQH 45  Nostoc sp. PCC ...
WP_011316406   6 DSVGIYLREISKYPMLTPEQEITLARQVK--------------------QMT---------------------VVQQHKQ 44  Anabaena variab...
WP_011244555  42 DLIRLYLQDIGRVRLLGRDEEVSEARWVQ--------------------RYMqllavrncvaveeggvlkdyvDLQEGRD 101 Synechococcus e...
WP_011365519  21 DLLRLYLQDIGRVDLLTNEEEVTLARLVQrreallsqqqklaesdaaigELH---------------------RLEELQR 79  Synechococcus s...

CAE21243      50 ELEGQTGEPAsrkelak-aaglselQLKKK----------------------LQ----------------------SGRR 84  Prochlorococcus...
AAQ00835      58 ELESTNGKKPskedlai-dagisvrELSKR----------------------LK----------------------RGVR 92  Prochlorococcus...
WP_011126980  62 ELESRDGDKPsrdklak-asgltplQLKRK----------------------LQ----------------------HGRR 96  Synechococcus s...
WP_010993943  62 ELAEKLQREPtlqewad-kmqlkedVLLQQ----------------------LS----------------------QGQI 96  Nostoc sp. PCC ...
WP_010872341  47 SLAEGKDGEPvspsewakaadlsirELEKA----------------------IK----------------------EGER 82  Synechocystis s...
WP_010993936  52 TLKKQLNHEPsqkelak-yvqlseiEVKDI----------------------FQ----------------------QGTQ 86  Nostoc sp. PCC ...
WP_010999734  46 ELTQKLEREPttlelan-flnkteaQVNQI----------------------LE----------------------LGQR 80  Nostoc sp. PCC ...
WP_011316406  45 VLEEQLHQQLniqqlaa-dmgksetEVFQI----------------------LR----------------------LGQK 79  Anabaena variab...
WP_011244555 102 RLTAQLGHRPsfeawak-ivdcsltELRQA----------------------LQlglhrwaevcqldleelkqvckEGQR 158 Synechococcus e...
WP_011365519  80 REANQHSHWPtkqewar-aadlplpELQQRidrgyqawaeqaqleakdlklaLR----------------------NGRR 136 Synechococcus s...

CAE21243      85 AKERMVSANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWWIRQGITRAIAEKSRTIRLPI 164 Prochlorococcus...
AAQ00835      93 AKERMVSANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPARGYKFSTYAYWWIRQGITRAIAEKSRIIRLPI 172 Prochlorococcus...
WP_011126980  97 AKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWWIRQGITRAIAEKSRTIRLPI 176 Synechococcus s...
WP_010993943  97 AKQKMIQANLRLVVSIAKKYQKRNLEFLDLIQEGALGLERGVEKFDPTLGYKFSTYAYWWIRQGITRAIAQQSRTIRLPI 176 Nostoc sp. PCC ...
WP_010872341  83 AKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPI 162 Synechocystis s...
WP_010993936  87 AKQKMMVANLRLVVAIAKKYQRRNLELMDLIQEGSLGLERGVEKFDPTRGYKFSTYAYWWISQAMTRAISQQSRTIRLPI 166 Nostoc sp. PCC ...
WP_010999734  81 AKQKMITANLRLVVSIAKKYQRRNLEFLDLVQEGAIGLQRGIEKFDPNRGYKLSTYAYWWVTQAITRAIAEKSRTVRLPI 160 Nostoc sp. PCC ...
WP_011316406  80 AKEKMIAANLRLVVAIAKKYRWSQLEFLDLVQEGSIGLQKAVERFDPNRGYKFSTCAYWWIRQEITKAIANKSTTIRTPS 159 Anabaena variab...
WP_011244555 159 AKDHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATQSRTIRLPV 238 Synechococcus e...
WP_011365519 137 AKDHMIQANLRLVVAVAKKYQQRGMEILDLVQEGTLGLERAVEKFDPTRGFRFSTYAYWWIRQGITRAIATQSRTIRLPV 216 Synechococcus s...

CAE21243     165 HITEMLNKLKKGQRELSQEMGRTPTVSELAEFVELPEEEVKDLMCRARQPMSLEMKVGDGDETELLELL-AGEEELPSEK 243 Prochlorococcus...
AAQ00835     173 HITELLNKLKKGQRELSQHLERTPTMQELSAYVEIPVEEVKDLMFRASQPVSLESKVGDGEDTSLLDLL-AIDTDLPDQQ 251 Prochlorococcus...
WP_011126980 177 HITEMLNKLKKGQRELSQELGRTPTITELAQYVELPEDDVKDLMCRARQPVSLEMKVGDGDDTELLELL-AGDADLPSDQ 255 Synechococcus s...
WP_010993943 177 HMADKLNKIKCVQRELSQKLGYIAGVTEIAQALNLEPSQIREYLQLVRQPVSLDMRIGFEQDTQLQDLL-KDDGMSPERY 255 Nostoc sp. PCC ...
WP_010872341 163 HITEKLNKIKKAQRQLSQEKGRAASIAELAEHLELTPKQVREYLERSRHPLSLDLRVGDNQDTELGDLL-EDDGPLPEDF 241 Synechocystis s...
WP_010993936 167 HITEKLNKFKKVQRELSQKLKRSPSADEIAEKMKLNPAQIRELLMISRQPASLDKQVGDNEDTELQELLtEVPETSPEIQ 246 Nostoc sp. PCC ...
WP_010999734 161 HVNEKLNQIKKVQREFFQTLGRRATVAEIAQKLELEPSQIREYLKVASGTISLDLKIGDNKETELSELL-ASEGVSPDEN 239 Nostoc sp. PCC ...
WP_011316406 160 HMNDRLIKLKKVQRELVKILGREPNIAEIAEFAELEPNQVRECLIAFRHPLSLDRPMGQEDEVDFLEIL-PADGTSPNEY 238 Anabaena variab...
WP_011244555 239 HVTEKLNRIKKAQRKIAQTKGRTANLEEIAQELEMTPDQVREVLLRVPKSISLETRVGKEKDTELGDLL-ETTDFTPEER 317 Synechococcus e...
WP_011365519 217 HVTEKLNRIKRVQQEIASNEGRIASIADLARELGISEDTVRQTLARVPRSVSLDTRVGREQDTQLGDLI-EDGHATPEQT 295 Synechococcus s...

CAE21243     244 VEVDCMKGDLRTLLEKLPELQGRVLRMRYGIDGGEPMNLTGIAKTLGMSRDRTRRLEREGLALMR 308 Prochlorococcus marinus str. M...
AAQ00835     252 IELDCMKGDLEVLLQKLPELQNRVLRMRFGINGEEPMTLTGIGRMLGISRDRVRNLLRDGLKGLR 316 Prochlorococcus marinus subsp....
WP_011126980 256 VEEDCMKGDLRSLLGQLPHLQEQVLRMRYGMDGEDPMSLTGIGRILGMSRDRVRNLERDGLAGLR 320 Synechococcus sp. WH 8102
WP_010993943 256 AERELLYQDIHNLLAKLTPQQKEVLILRFGLAGGCELTLVQISQRMGISRERVRQVEKQALTLLR 320 Nostoc sp. PCC 7120
WP_010872341 242 ATYASLQLDLDSLMAELTPQQREVLILRFGLNDGQPLTLASIGSMLSISRERVRQIEREALNKLR 306 Synechocystis sp. PCC 6803
WP_010993936 247 VTQNLMRQDIYLSLRELTPQQQQVLILHYGLEDNYELTLTQVAQHLNISERRVRYLEKQALSYLR 311 Nostoc sp. PCC 7120
WP_010999734 240 ITHEMLRQDLSDLLASLKPMQREVLILRFGLLDNQEQSLAQIGEKLNLSRERVRQIQQKAMTALR 304 Nostoc sp. PCC 7120
WP_011316406 239 LDEGFLRQDLANCLITLKPLQKQVLMLRFGLGSVDKLSTKQIAERLNIKQAKVGTTQKQAIKVLH 303 Anabaena variabilis
WP_011244555 318 LTQESLSNDLQRLLLELNHRERDVIRMRFGLRDGQIYSLAEIGQVLDLSRERVRQIEAKALQKLR 382 Synechococcus elongatus
WP_011365519 296 LTHDELHNDLEHLLDELTSREAAVLRRRFGLEDDTPQTLAQIGEELKLSRERVRQIETRALLKLR 360 Synechococcus sp. CC9605
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