Conserved Protein Domain Family
BAF

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pfam02961: BAF 
Barrier to autointegration factor
The BAF protein has a SAM-domain-like bundle of orthogonally packed alpha-hairpins - one classic and one pseudo helix-hairpin-helix motif. The protein is involved in the prevention of retroviral DNA integration.
Statistics
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PSSM-Id: 460766
Aligned: 42 rows
Threshold Bit Score: 125.768
Created: 21-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
XP_004343428   3 ETTSQKHQNFIKEQMRDKPVNQVAGIGEKISGELNDQGFKYAYQLLGQFLILNKNEGDFLDWFKEVApSANSKHRQDAYE 82 
XP_019920569   1 MSATCKHDYFVRLTMGDKPVTVLPGIGRGNQKALRKEGYYKACQVFGRFLILDMSETKFKKWLVNVC-GADTKSQTACYD 79 
EDO30608       1 M-TTIKHENFVGEPMGRKAVDKVPGIGPEHKKELARKGIHYAYQLLGEFLIRNMEKERFEDYIMEI--GANIKQKKDCYE 77 
XP_001630099   1 M-TTKKHENFVGEPMGRKAVDKVPGIGPEHKKELERKGIHYAHQLLGEYLVCNMDKGKFGDYIMRI--GANNKEKNGCFE 77 
EGD82723       4 RTTSKKHDEFVRERMEDKAATELAGIGEKGGEQLAALGFATAKQVLGQFLVMGEDPDVFGDWLQQNVsKLNSKHRGDLIF 83 
Q1L957         1 MTTSQKHRRFCCEPMGDKLVYDLPGIGPVLGGRLQNKGLIRARDVLGRFLILNKDEWKFKSWLRDSC-GANAKQQRDCYN 79  zebrafish
XP_008216413   6 PTTSQKHRDFTSEPMRNKSVNALPGVGGVLGERLKTSGYSKAKNVLGEYLVRDENKASFQGWMKDQV-GANQKQSGDTYN 84 
XP_014353405   1 MTTSHKHKGFIRKPMEDKAVEALPGIGKVLGGRLRHNGYGKAKNVLRQFRVLKKKERAFEDWLKDTC-GANMKQAADCYE 79 
XP_006013609   1 MTTSQKHKDFICKPMVDKAVETLPGIGKVLGGRLRANGYGKVKNVENQFLLLGKDAAAFRQWLRDTC-GANTKQSGDCYK 79 
CCD75283       1 MTTSQKHRSFVSEPISEKVVEELPGIGEKLGERLKAKGYDKAYVVLGQFLLLRCEEELFKEWLSQTC-GANSKQSGDCYT 79 
XP_004343428  83 CLSKWCELM 91 
XP_019920569  80 GLKEWYNRN 88 
EDO30608      78 AMKEWCDEH 86 
XP_001630099  78 AMKGWCDEH 86 
EGD82723      84 CLQEWIKRN 92 
Q1L957        80 CLREWTSNN 88  zebrafish
XP_008216413  85 SLQEYQRNF 93 
XP_014353405  80 GLLEWSRRH 88 
XP_006013609  80 CLYELTINI 88 
CCD75283      80 ALKDWCSCF 88 
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