Conserved Protein Domain Family
F-box_AtAFR-like

?
cd22152: F-box_AtAFR-like 
F-box domain found in Arabidopsis thaliana protein ATTENUATED FAR-RED RESPONSE (AtAFR) and similar proteins
AtAFR, also called SKP1-interacting partner 29 (AtSKIP29), or F-box protein AFR, is a component of SCF (SKP1/ASK-cullin-F-box protein) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. It is part of the phyA-mediated signaling transduction pathway leading to the regulation of gene expression and hypocotyl elongation in response to red and far-red light exposure. This subfamily also includes many other Arabidopsis thaliana SKP1-interacting partner proteins. The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression.
Statistics
?
PSSM-Id: 438923
Aligned: 39 rows
Threshold Bit Score: 54.1121
Created: 25-Feb-2019
Updated: 17-Oct-2022
Structure
?
Aligned Rows:
 
putative Skp1
Feature 1:putative Skp1 binding site [polypeptide binding site]
Evidence:

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1             #   #  ##  ##  # ##    ### #              
Q8LAW2         28 LISGLPNDIAELCLLRLPYPYHAlYRSVSSSWNKTITnprFLFSKQ 73   thale cress
XP_018471365   15 WDRLIPDEIINQCIARVPLSSHGaMSLISKQIGSFINg-gEIFGTR 59   radish
Q9LK86         29 TSLPLPDEIIVNCFAYIPRCDYPsLSLVSKTFNRLITs-iELNIVR 73   thale cress
KFK36616       14 SLSWLPRDIIWNCLLRVQRSDHLsVSRVSKSLKSLVCs-pEFRCLF 58   gray rockcress
VDD12626       36 KLNSLPEDVMQLCIAPVPRYFYPcIWLISKEVGNAVSs-pELFHKR 80   wild cabbage
RID66141       17 HLLSLPEDIVLSCLARVPRNCNLnLTHVSKTLRTFVSs-pELNRLR 61   field mustard
CDY34138       14 SFSLLPDDIILSCLALMSKSYYPkLSLVSKRFHALIVs-nGLSPFG 58   rape
XP_010465129  177 SFLQMPPDITLQILARIPKYHYPiVSCVAKDLHNLLKs-rELHNVR 221  false flax
RID59987       22 SSLPLPDDISMICLAYVPRCDHPsLSEVCKTFNQIIAs-sELNRLR 66   field mustard
XP_018459249   84 LLLSLPNDLVLNCLARVPTSHNPtLACVCKNFQSLVLs-gELAQMR 128  radish

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap