Conserved Protein Domain Family
REF

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pfam05755: REF 
Rubber elongation factor protein (REF)
This family consists of the highly related rubber elongation factor (REF), small rubber particle protein (SRPP) and stress-related protein (SRP) sequences. REF and SRPP are released from the rubber particle membrane into the cytosol during osmotic lysis of the sedimentable organelles (lutoids). The exact function of this family is unknown.
Statistics
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PSSM-Id: 461731
Aligned: 29 rows
Threshold Bit Score: 235.256
Created: 22-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
XP_010234141   22 RPRLRRLEFVHVAAAQAALCLAGLYALARDHSGPLRPGVDAVESAVRGVAGPVVGRFKDVPLHVLAFVDRKVDGTVQELD 101 
XP_001779261    7 SADLKYLGLVHALVLQAAAYLATLYAYAKDSSGPLKPSVDNVEGTVKTVVGPVYQKVEGKPLQLLQYVDSKVDETISYVD 86  
ERN09937        9 DLELKYLGFIKIAAIKAIICILSLYEYAKGNSGSIRSHIDKVEGHVKTVVGPVYEKVNGVPLNILKFIDGKVDENLGNIQ 88  
XP_006352188   12 EVNLKHLGFVRVLALNTAVLVSNLYDYAKQNSGPLRSTVGTVENAVTTVVRPVYERFKGVPDEVLVFLDKKVDDGTAKFD 91  
XP_019078967 1156 KRELKHLGFVRIAAIQALVCVSNLYYYAKQNSGPLRSTVGAVEDAVTAVISPVYDKFKGVPDHLLVFMDKKVDEVSAKFD 1235
XP_009105122   10 ELGLKHLGFVRVAAIHVLVSLSSLYDYAKQNSGPLKPAVGKVEGAVTTVVTPVYNKLKNVPDTLLLFLDHKVGEASDKFD 89  
KRH42669       15 EEELKHLGFVKIAAMKALVCVSNLYGFAKQNSGLLRSAVGTVEDTVTTVLGPVYHKFNAVPNHILLFVDNKVDEAAHKFD 94  
KRG97418       14 NKDLKHLGFVRIAAIQTFVIVSNLYEYAKQNSGPLRSVVGTVENTVTTILGPVCNKFKDVPDDVLVFVDKKVDEASHKFD 93  
EEF47471        9 SKELKHLGFVRMVAVQTLVCVSNLYDYAKQNSGPLRSTVGTVETAVTTVVGPVYQKFKDLPDHLLVFVDNKVDEGTQKFD 88  
XP_002297837   10 DLDLKHLGFVRIAAIQVLVCVSNLYDYAKRNSGPLRSAVGTVEGTVNAVVGPVYEKFKGVPDHLLVFLDHKVDEATIKFD 89  
XP_010234141  102 KHLPSSLKAASARAYAAAQGVPEAAREITSEAQRSGLSGAArvaygkvepvakdvlgkiepaaKDLYTRYEPAAEHLAVS 181 
XP_001779261   87 GVVPKYVKDKSYQALDVAKQAPDAARGLVSDVQSRGVYSTA----------------------SSLYERYEPVAEQLTFE 144 
ERN09937       89 QYAPEFVKGFYSKASSVARKAPELYEKVATDIKERGAAKVG----------------------KEACAKYKPIVEDYAIK 146 
XP_006352188   92 ERAPPLAKKVVSKIQSLFQKASEVAQDLSKDIQEAGPRAAI----------------------YHAGELSKQFATSRVAV 149 
XP_019078967 1236 KHAPPVAKEVVGQAQCLVLKASKTAQTLVSEAKAGGPSAAL----------------------QHAATAYKLFMLTQLVK 1293
XP_009105122   90 KHAPPVAKKVVSRANVLIQTTTEKAQRFVKEARTGGPRGAF----------------------NYAAAEYKCFLVTNSVR 147 
KRH42669       95 EHAPSLAKQVASQVTCLVQEVTHKAEKVVSEAQSGGARAAA----------------------NYVATESKQIVLFGSVK 152 
KRG97418       94 EHAPPFAKHIADQAKGVIQKVTCEAGKVASEAQSGGPRAAV----------------------HYVATESKHFVLINSVK 151 
EEF47471       89 KHAPPVAKQVASQAQTLMQVALQKVQELVNEARVGGARAAV----------------------HFAAKESKHLALTQSVK 146 
XP_002297837   90 KRAPPVAKQVVSQARYLIEKASEKAKVLANEFQAGGPRAAV----------------------HYVSTESKHLFLTESVK 147 
XP_010234141  182 TWRALNGLPLFPHVAQIVVPTAAYWSEKYNSVIASAAQQGYTGARYLPAIPTERIAKVFGE 242 
XP_001779261  145 AWQKLLTLPLVPQAVNVAAPAAKFGVVQYNKLAEILKSKNLPLTAYIPVVPIEKLEKAMKp 205 
ERN09937      147 ACFQLQRLPFLAQVAQVAGPTAGFLCFKYNHLVS----KGYAPFCYLPRFPLEEIIKAIng 203 
XP_006352188  150 LWFYVNHCPPLHGIAQMAAPTAANWSEKYNHFVADLQEKGYSIVSYIPLIPVEEISKAYKQ 210 
XP_019078967 1294 LWFILNKVPLFHTVADMAVPTAAHWSDKYNHVVTDMSVKGYTIFGYFPLVPIDKIAKTFKQ 1354
XP_009105122  148 VWAKLNRFKPIHAVGNKAFPVAAHVSGIYNDLVTDMTQMGYPVVGYLPLVPVDDIVKAYEK 208 
KRH42669      153 LWTGLNHYPPFHAVAEMAVPTAAHWSEKYNNVVKGTSEKGYAVFDYLPLIPIDDIAKAFKH 213 
KRG97418      152 LWNGLNHYPPFHALSEMAIPTVAHWSEKYNHVIKAMTQKGYSFVGYLPLIPIEEIAKAFKQ 212 
EEF47471      147 VWIKLNQFPAVHTVADMAVPTAAHWSEKYNHVIKDMTQKGHTLFGYLPLVPVDEIAKAFKQ 207 
XP_002297837  148 VWVKLDQYPSVHKVAEVAVPTAAHWSEKYNHFVKEMSQKGYVVFGYLPVVPVDEISNAFKQ 208 
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