Conserved Protein Domain Family
T-box_TBX18_like

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cd20199: T-box_TBX18_like 
DNA-binding domain of T-box transcription factor 18 and related T-box proteins
TBX18 acts as a transcription repressor involved in the developmental processes of a variety of tissues and organs, including the ureter, vertebral column. epicardium and coronary vessels. TBX18 is important for the development of the head portion of the sino atrial node (SAN); SAN is the pacemaker region of the heart that initiates each heartbeat. This subgroup belongs to the T-box family of transcription factors which play a multitude of diverse functions throughout development. The founding member of the T-box family is Brachyury (also known as TBXT, or T). T-box family members share a conserved DNA-binding domain (T-box) which binds DNA in a sequence-specific manner. Common features shared by T-box family members are DNA-binding and transcriptional regulatory activity, a role in development, and conserved expression patterns.
Statistics
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PSSM-Id: 410325
Aligned: 6 rows
Threshold Bit Score: 408.28
Created: 8-Mar-2019
Updated: 25-Oct-2021
Structure
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Aligned Rows:
 
DNA binding
Feature 1:DNA binding site [nucleic acid binding site]
Evidence:
  • Comment:based on related T-box transcription factors bound with DNA
  • Comment:T-box monomers dimerize upon DNA binding; some form weak dimers, others tight dimers, some may bind as non-associating monomers where the dimer is kept in register by the DNA

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                      ##                                #               
O95935       136 PQAPRVDLQGAELWKRFHEIGTEMIITKAGRRMFPAMRVKISGLDPHQQYYIAMDIVPVDNKRYRYVYHSSKWMVAGNAD 215 human
NP_989784    118 PQAPRVELQGAELWKRFHEIGTEMIITKAGRRMFPAMRVKISGLDPHQQYYIAMDIVPVDNKRYRYVYHSSKWMVAGNAD 197 chicken
XP_005995114 104 GDEVRVELQGADLWKRFHEIGTEMIITKAGRRMFPAMRVKIAGLDPHQQYYIAMDIVPVDNKRYRYVYHSSKWMVAGNAD 183 coelacanth
XP_007906618 102 REDIRVELQGADLWKRFHDIGTEMIITKAGRRMFPAMRVKITGLDPHQQYYIAMDIVPVDNKRYRYVYHSSKWMVAGNAD 181 elephant shark
NP_001267592 109 TALVRVDLQGAELWKRFHEIGTEMIITKAGRRMFPAMRVKITGLDPHQQYYIAMDIVPVDNKRYRYVYHSSKWMVAGNAD 188 African clawed ...
NP_705951    106 GEEMRVDLQGSDLWKRFHEIGTEMIITKAGRRMFPAMRVKIAGLDPHQQYYIAMDIVPVDNKRYRYVYHSSKWMVAGNAD 185 zebrafish
Feature 1                                      #  #            ##                                
O95935       216 SPVPPRVYIHPDSPASGETWMRQVISFDKLKLTNNELDDQGHIILHSMHKYQPRVHVIRKDCGDDLSPIKPVPSGeGVKA 295 human
NP_989784    198 SPVPPRVYIHPDSPACGETWMRQVISFDKLKLTNNELDDQGHIILHSMHKYQPRVHVIRKDCGDDLSPVKPIPSGeGVKA 277 chicken
XP_005995114 184 SPVPPRVYIHPDSPASGETWMRQVISFDKLKLTNNELDDQGHIILHSMHKYQPRVHAIRKECGDDLSPVKPVPSGeGVKA 263 coelacanth
XP_007906618 182 SPVPPRVYIHPDSPASGDTWMRQVISFDKLKLTNNELDDQGHIILHSMHKYQPRVHVIRKECGEELSPVKPIPTGeGVKH 261 elephant shark
NP_001267592 189 SPVPPRVYIHPDSPASGETWMRQVISFDKLKLTNNELDDQGHIILHSMHKYQPRVHVIRKDCGEELSPVKPIPVGeGEKA 268 African clawed ...
NP_705951    186 SPVPPRVYIHPDSPASGETWMRQVISFDKLKLTNNELDDQGHIILHSMHKYQPRVHVIRKECGEELSPVKAVPTGdGVKA 265 zebrafish
Feature 1                   ####    #  ##  #######  
O95935       296 FSFPETVFTTVTAYQNQQITRLKIDRNPFAKGFRD 330 human
NP_989784    278 FSFPETVFTTVTAYQNQQITRLKIDRNPFAKGFRD 312 chicken
XP_005995114 264 FSFPETVFTTVTAYQNQQITRLKIDRNPFAKGFRD 298 coelacanth
XP_007906618 262 FSFPETVFTTVTAYQNQQITRLKIDRNPFAKGFRD 296 elephant shark
NP_001267592 269 FSFPETIFTTVTAYQNQQITRLKIDRNPFAKGFRD 303 African clawed frog
NP_705951    266 FSFTETVFTTVTAYQNQQITRLKIDRNPFAKGFRD 300 zebrafish

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