Conserved Protein Domain Family
RRF_GI

?
pfam12614: RRF_GI 
Ribosome recycling factor
This family of proteins is found in bacteria and viruses. Proteins in this family are approximately 130 amino acids in length. There are two conserved sequence motifs: LPS and LKR. Overproduction of ribosome recycling factor (RRF) reduces tna operon expression and increases the rate of cleavage of TnaC-tRNA(2)(Pro), relieving the growth inhibition associated with plasmid-mediated tnaC overexpression.
Statistics
?
PSSM-Id: 432670
Aligned: 8 rows
Threshold Bit Score: 212.675
Created: 24-Mar-2022
Updated: 17-Oct-2022
Structure
?
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
CASKLGSI:C427_1407   2 NEDIIIALPSLIHRVGGETAKQAKAIALQYECELKRVRRSRNWNVTGDAIKVQTYALQLKAhqmisqklnKQGDgEFHYL 81 
Q087H4               2 TEDITIPLPSLIHRIGGEKAKQAKIIALQYDCELKRVRRSRNWRVIGEAVNIQSFTEQLKA---------QSDD-NFRYL 71  Shewanell...
Q8EIP5               2 HDDISIPLPSLIHRIGREAVKRAQAMALKHGCELKRVRRSRNWSITGQAIAIQSCCGELKA---------QSDAaEFAFM 72  Shewanell...
Q87J76               3 ETKITISLPSLIHRIGGDHAKRAKTLAAEKQCDLKRIRRSRNWQISGEALDVKAFLDHLKS---------EEAE-VMRFA 72  Vibrio pa...
Q6LS99               3 DKTITTLLPSLIHRMGSDNTKKAKLVALECDCEIKRIRRSRNWQVVGDEHSFKKLSERLRL---------SEPE-AMQFL 72  Photobact...
Q9KRJ8               5 DQAIAITLPSLIHRIGSDTVKRLKLQAQTFDCELKRIRRSRNWQLLGEAASMQKFVIQIKQ---------TEYQ-VAEYL 74  Vibrio ch...
WP_013052787         2 NEDITISLPSLIHRIGREEVNQAKAIAVQYQCELKRVRRSRNWGLSGEAIKIQSYSAGLKAel------lKREA-GFRYL 74  Shewanell...
Q12K07               2 NEDINISLPALIHRIGGAQTKQAKIIATQYHCELKRVRRSRNWLLVGGAKAVQSFNAELKT---------QDTQ-GFRHL 71  Shewanell...
CASKLGSI:C427_1407  82 IKKIETALLGHADKLETLEAKLIRLITQIPSITLSKLVLLTHCTEAEARVARFEAE 137
Q087H4              72 IRKIETALLGHADKLEPLDEKLVRLIKQTPGITLGELIQLTQCTLTEARVARFNVD 127 Shewanella frigidimarina NCIMB 400
Q8EIP5              73 IKKIDTALLQHADKLEPLSAKLIRLINQNPAITLGELMQQTQCSITEARLARFEAE 128 Shewanella oneidensis
Q87J76              73 INKIEQALLAHQDKLEPLDVKLIRLVRQNPNITLAELMAETNCTLVQARTARFDAE 128 Vibrio parahaemolyticus
Q6LS99              73 IRKIDERLTTYNDKLERIEDKLKRLVIQNSNITLAELMQITNCSITEARFARFDAD 128 Photobacterium profundum
Q9KRJ8              75 IRRVEAGLRLPSDKIEPIEVQLQRLVQQNPSITLAELMAATHCSLMQARAARFAEE 130 Vibrio cholerae
WP_013052787        75 IQKIETALLDHADKLEPLEAKLARLLTDNPNITLAELIHITDCTLAEARTARFHAD 130 Shewanella violacea
Q12K07              72 IQKLDSALLNHSDKLEPLAEKLARMIAAKPNITLGELMQASECSLAEARLARFNED 127 Shewanella denitrificans OS217
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap