3KBB


Conserved Protein Domain Family
HAD_BPGM-like

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cd16423: HAD_BPGM-like 
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uncharacterized subfamily of beta-phosphoglucomutase-like family, similar to uncharacterized Bacillus subtilis YhcW
This subfamily includes the uncharacterized Bacillus subtilis YhcW. It belongs to the beta-phosphoglucomutase-like family whose other members include Lactococcus lactis beta-PGM, a mutase which catalyzes the interconversion of beta-D-glucose 1-phosphate (G1P) and D-glucose 6-phosphate (G6P), Saccharomyces cerevisiae phosphatases GPP1 and GPP2 that dephosphorylate DL-glycerol-3-phosphate and DOG1 and DOG2 that dephosphorylate 2-deoxyglucose-6-phosphate, and Escherichia coli 6-phosphogluconate phosphatase YieH. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Statistics
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PSSM-Id: 319859
Aligned: 17 rows
Threshold Bit Score: 173.595
Created: 17-Mar-2016
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 13 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1            #####                                                                       
3KBB_A         3 AVIFDXDGVLXDTEPLYFEAYRRVaesygkpytedlhrrixgvp-ereglpilxealeikdslenFKKRVHEEKKRVFse 81  Thermotoga mari...
YP_038264      4 AIIFDFDGLIVDTETIWFHSFRDAvreyggdlplee------------------fakcigttddvLYEYLNEQLKEKFdk 65  [Bacillus thuri...
YP_001635746   5 ALIFDFDGLMVDTETPALQSWQEIyaeygvtlsvhdwait---------lganagfdahahlvalLRQRDPQLAEQVIaa 75  Chloroflexus au...
P54607         4 ALIFDFDGLILDTETHEYEVLQEIfeehgsvlplsvwgkvigtaagfrpfeyleeqigkklnheeLTQLRRERFAKRMes 83  Bacillus subtil...
YP_003769784   5 ALVFDFDGTLADTESAVLQSWQAVfrehgtelpldawyavigtqrttpamfallaehspgidpeaLRPRTRAHVLRLLen 84  Amycolatopsis m...
YP_002352375   5 AVIFDMDGVIFDTERLGYIFWKKAleefgyiineeiyyetvgvn--ileterifkkylgdipfdeIYKRKKELIEEYIek 82  Dictyoglomus tu...
NP_296332     29 AVVFDFDGTILDTETREFHHWQELyrehgrelalsdwqrgvgtw--dafdpwaglpeqvqadrenVRARLHDTIVSDIag 106 Deinococcus rad...
YP_003317572   4 AIVFDFDGLTVDTETAWYQAFSSV-----------------------------------------LAERGVHLPLARFlq 42  Thermanaerovibr...
NP_465777      3 AVVFDFDGTMLDTENLWYTETMNYlketygidlpdevy-------------qqiigtseepiiryMMEATNGAFDKEAfl 69  Listeria monocy...
YP_001389136   4 TIIFDMDGVIIDTEPLSFETSKILlkmydkdytedfhnacmgls-mievirrtisnydleededeLLKRRNEIYIKIAle 82  Clostridium bot...
Feature 1                                                                        ###             
3KBB_A        82 ll---------------------------------------kenPGVREALEFVkskrIKLALATSTpqREALERLRRld 122 Thermotoga mari...
YP_038264     66 yalkekvknl-----------------------hkekmkipearDGVKEYLEEAkemgLKIALASSSsrEWVIPFLEElq 122 [Bacillus thuri...
YP_001635746  76 rdtilarrqa----------------------rkdelsapqtllPGVAELLAEAhskgLPCAVASSSsrRWVEGWLERlg 133 Chloroflexus au...
P54607        84 e----------------------------------------karPGVEAYLNAAkdlgLKIGLASSSdyKWVSGHLKQig 123 Bacillus subtil...
YP_003769784  85 l----------------------------------------gprEGVLGYLETArehgIKLAVASSSsgAWVNPHLERlg 124 Amycolatopsis m...
YP_002352375  83 ng--------------------------------------lpvkGGFFELLDFLdekkIPRGIATSTerERAIPLLERak 124 Dictyoglomus tu...
NP_296332    107 q----------------------------------------dlrPGVRAVLEGVkaagLRLALATSSdrEWVTRWMRQhn 146 Deinococcus rad...
YP_003317572  43 vvgtddgplhdffrealgqdcdvkaiedaaaeryreimmdprprEGVLDYLEDAaemgLKVGMASSSgaSWVGSYLDRlg 122 Thermanaerovibr...
NP_465777     70 ttvaeach---------------------------lgqqslgfrDGFKEFFEQVkandYKIGLATSSgfDWIEPTLNRlg 122 Listeria monocy...
YP_001389136  83 ks---------------------------------------epiNGLFELLDYIkelnIKCAVATGSnrGIAEILLKKlg 123 Clostridium bot...
Feature 1                         #                       ##  ##                                 
3KBB_A       123 lekyfDVXVFGDQvkngKPDPEIYLLVLERLNvvpekVVVFEDSKSGVEAAKSAGieRIYGVVHslndgkalleagAVAL 202 Thermotoga mari...
YP_038264    123 irdyfEVIKTREDvekvKPDPALYRVAIEDLGidsseAVVFEDSLNGLKAAIAAGl-TCVVVPNdvtrn---lpfeNHHL 198 [Bacillus thuri...
YP_001635746 134 irpffATVVTADDvaatKPAPDLFLEAARRLGlppatCLVLEDSPNGIRAARAAGc-PVVAIPGaisgq---vplpPADL 209 Chloroflexus au...
P54607       124 lfddfEVIQTADDveevKPNPELYLLAAKNLGvspaeCLAFEDSVNGSIAAKRAGm-KCVIVPNkvtgt---lmfeDYDH 199 Bacillus subtil...
YP_003769784 125 idgyfDAVLTGDLhk-aKPDPDLYLAALDALGtaaeeAIAFEDTPHGVTSAKAAGl-TCVAVPNaitrs---ldfgLADV 199 Amycolatopsis m...
YP_002352375 125 ilnkfDVIVCGDDveksKPEPDIFLLTAQRLKanpkeCIVLEDSDNGVLAAKRAGmtPLLIIDFkpphp--etlkrAYKV 202 Dictyoglomus tu...
NP_296332    147 lldlfEAVATRDDvrrvKPDPELYLLAAARLGlrpeeCLAVEDSFNGATAAVAAGm-RLVVVPNdvtrt---qpfpAEWR 222 Deinococcus rad...
YP_003317572 123 iggcfHAVVTREQvqrvKPAPDLYVRALELLQvepheALAFEDSLNGLLAARRAGl-RCVVVPNrvtes---lpfkGHAL 198 Thermanaerovibr...
NP_465777    123 iladfETIQTADHvdeiKPHPALYLQAVEALGvkpeeAVAIEDSKNGALSAMQAGl-KVYIVPNeatkn---itfpKEAT 198 Listeria monocy...
YP_001389136 124 iidyfQFILPGDEmeksKPDPWSYLEAMKRLGssseeTIIMEDSINGIKSAIAAGc-KVIAINSiwedk---stkeIISF 199 Clostridium bot...
Feature 1                      
3KBB_A       203 VKPeeilNVLKEVL 216 Thermotoga maritima MSB8
YP_038264    199 RIEs---MKDKSLK 209 [Bacillus thuringiensis] serovar konkukian str. 97-27
YP_001635746 210 TLPs---LAHTTLA 220 Chloroflexus aurantiacus J-10-fl
P54607       200 RLEs---MAEMELA 210 Bacillus subtilis subsp. subtilis str. 168
YP_003769784 200 VLPs---FTAKPLE 210 Amycolatopsis mediterranei U32
YP_002352375 203 FNSl---WEVKEYL 213 Dictyoglomus turgidum DSM 6724
NP_296332    223 RLEd---GYAGGLA 233 Deinococcus radiodurans R1
YP_003317572 199 RLSs---MGEMSLS 209 Thermanaerovibrio acidaminovorans DSM 6589
NP_465777    199 VVSs---FAEINLK 209 Listeria monocytogenes EGD-e
YP_001389136 200 EKDl---KGAKNVI 210 Clostridium botulinum A str. Hall

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