Conserved Protein Domain Family
sms

?
TIGR00416: sms 
DNA repair protein RadA
The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus (SP:P45266) and in Listeria monocytogenes (SP:Q48761) . for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)). [DNA metabolism, DNA replication, recombination, and repair]
Statistics
?
PSSM-Id: 273067
Aligned: 5 rows
Threshold Bit Score: 762.802
Created: 7-Oct-2014
Updated: 25-Oct-2021
Structure
?
Aligned Rows:
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
P74391         1 MAKA-RTKFVCSACGADHAQWFGRCPKCHEYGSLQEEIVnavssgtnHRSLGAQKSRSSKVKTGQPQA--ALTFSQIRQE 77  Synechocystis s...
P24554         1 MAKApKRAFVCNECGADYPRWQGQCSACHAWNTITEVRL--------AASPMVARNERLSGYAGSAGVakVQKLSDISLE 72  Escherichia col...
P37572         1 MAKT-KSKFICQSCGYESPKWMGKCPGCGAWNTMVEEMIk-----------kAPANRRAAFSHSVQTVqkPSPITSIETS 68  Bacillus subtil...
AAC23242      18 MAKApKTAYVCNDCGAEFSRWQGQCSACKAWNTITEVRL--------ISTAKS-KNDRFSGYAGETQAk-IQTLSEISLQ 87  Haemophilus inf...
WP_000601150   9 LAKK-TSLFECQHCGFTSPKWLGKCVQCNAWESFIELNQ-------------AQKEVLNTLKKPIPQAqkSVSIAAIEHE 74  Helicobacter py...
P74391        78 NQGRFLSGYGELDRVLGGGIVPGALILIGGDPGIGKSTLLLQVAFQLATRlPRILYVSAEESGQQIKLRATRLGitqTVE 157 Synechocystis s...
P24554        73 ELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQ-MKTLYVTGEESLQQVAMRAHRLG---LPT 148 Escherichia col...
P37572        69 EEPRVKTQLGEFNRVLGGGVVKGSLVLIGGDPGIGKSTLLLQVSAQLSGSsNSVLYISGEESVKQTKLRADRLG---INN 145 Bacillus subtil...
AAC23242      88 ETPRFSSGFSELDRVLGGGIVPGSAILIGGHPGAGKSTLLLQVMCGLAKN-MTALYVTGEESLQQVAMRASRLG---LPS 163 Haemophilus inf...
WP_000601150  75 EVIKFSSTQSELDIVLGGGIAKGGLYLVGGSPGVGKSTLLLKVASGLAKNqQKVLYVSGEESLSQIKMRAIRLD---CIE 151 Helicobacter py...
P74391       158 PsqaqdginnlahdgNLFVLPETNLDDILRELEALQPQVAIIDSIQNLYFPALSSAPGSVSQVRECTGLLMQLAKRDHIS 237 Synechocystis s...
P24554       149 D--------------NLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVA 214 Escherichia col...
P37572       146 P--------------SLHVLSETDMEYISSAIQEMNPSFVVVDSIQTVYQSDITSAPGSVSQVRECTAELMKIAKTKGIP 211 Bacillus subtil...
AAC23242     164 D--------------QLKMLSETSVEQICNLADQLKPQIIVVDSIQVMHLADIQSSPGSVAQVRECASFLTRYAKTRQVA 229 Haemophilus inf...
WP_000601150 152 K--------------ELYLLNEINWPVIKANIESENYFACVIDSIQTLYSPEISSAPGSISQVREITFELMRLAKTRDIA 217 Helicobacter py...
P74391       238 LFIVGHVTKEGAIAGPKVLEHLVDTVLYFQGDRFASHRLLRSVKNRFGATQEIGIFEMVQSGLQEVLNPSQLFLGSREEF 317 Synechocystis s...
P24554       215 IVMVGHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEV 294 Escherichia col...
P37572       212 IFIVGHVTKEGSIAGPRLLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEMGIFEMREEGLTEVLNPSEIFLEERSAG 291 Bacillus subtil...
AAC23242     230 IIMVGHVTKDGTLAGPKVLEHAIDCSLLLEGEADSRYRTLRSHKNRFGAVNELGVFGMTEQGLREVKNPSAIFLSRGDEI 309 Haemophilus inf...
WP_000601150 218 IFIIGHITKEGSIAGPRVLEHMVDSVLYFEGDPSRELRILRSFKNRFGPTSEIGLFEMKEQGLVSAKEASSLFFS-KEEP 296 Helicobacter py...
P74391       318 MSGTAITVACEGTRPLVVELQALVSPTSYASPRRSTTGVDYNRLLQVLAVLEKRLGVPLSKLDAYLSVAGGLEVEEPAVD 397 Synechocystis s...
P24554       295 TSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSAD 374 Escherichia col...
P37572       292 SAGSSITASMEGTRPILVEIQALISPTSFGNPRRMATGIDHNRVSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAID 371 Bacillus subtil...
AAC23242     310 TSGSSVMVLWEGTRPLLVEIQALVDHSMLANPRRVAVGLEQNRLALLLAVLHRHGGLQMADQDVFVNVVGGVKVSETSAD 389 Haemophilus inf...
WP_000601150 297 MEGSAITITLEGSRALILEIQALVSECSFGSPKRLANGFDTNRLNMLIALLEKKLEIPLNRHDVFINVSGGIKISEPACD 376 Helicobacter py...
P74391       398 LAMAIALVASFRDRVVDPTMIILGEIGLGGQIRPVSQLEIRLKEAAKLGFKKAIVPKGQTG--IESAGIKLIPVGKVFAA 475 Synechocystis s...
P24554       375 LALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPk-KAPEGMQIFGVKKLSDA 453 Escherichia col...
P37572       372 LAIVISIASSFRDTPPNPADCFIGEVGLTGEVRRVSRIEQRVKEAAKLGFKRMIIPAANLDgwTKPKGIEVIGVANVAEA 451 Bacillus subtil...
AAC23242     390 LALLLALISSFRNRPLPQDLVIFGEVGLAGEIRPVPSGQERISEAAKHGFKRAIVPFGNKPk-SAVENMQVFTVKKLTDA 468 Haemophilus inf...
WP_000601150 377 LAVIASILSSFKNRKIDNKTAFLGEVSLNGRILEAPNLNARLKEMENYGFLKAILPKKPS----QKTSIKCYEANAVGKI 452 Helicobacter py...
P74391       476 I 476 Synechocystis sp. PCC 6803 substr. Kazusa
P24554       454 L 454 Escherichia coli K-12
P37572       452 L 452 Bacillus subtilis subsp. subtilis str. 168
AAC23242     469 L 469 Haemophilus influenzae Rd KW20
WP_000601150 453 V 453 Helicobacter pylori
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap