Conserved Protein Domain Family
TraF

?
pfam13728: TraF 
F plasmid transfer operon protein
TraF protein undergoes proteolytic processing associated with export. The 19 amino acids at the amino terminus of the polypeptides appear to constitute a typical membrane leader peptide - not included in this family, while the remainder of the molecule is predicted to be primarily hydrophilic in character. F plasmid TraF and TraH are required for F pilus assembly and F plasmid transfer, and they are both localized to the outer membrane in the presence of the complete F transfer region, especially TraV, the putative anchor.
Statistics
?
PSSM-Id: 433436
Aligned: 37 rows
Threshold Bit Score: 164.788
Created: 25-Mar-2022
Updated: 17-Oct-2022
Structure
?
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
WP_012675188    23 GWFFYEDPEkpkketvkkvekkieKPKEKKKEKPKKVEKPKPKPQPQQVVKKKKEDKFVFPVRPDAPQPVkeflLNPN-R 101 Persephonella...
Q6LW83          36 GWKWYNDPL---------------LIKEKALTPPPPTPSVTV---TRTLSPTQQMQWFHRYHDDTKNDAL----INKDdV 93  Photobacteriu...
WP_013908531    35 GWYAYEKYKk--------------TQETKQNSGERPVRQPKIHWPTYEEVLKMKPSDLKKWLQKATEEAV----ADPS-E 95  Thermodesulfa...
WP_013681658    30 GWFWYKNPP-----------------KKEKNKDKNKEEKFTMKTYTYKQLWNMYPDKFQKLLKYALRQAV----QNPT-P 87  Hippea maritima
jgi:Glov_0252   28 GWWWYQKEPe-------------kQAEKQEKKKKPPKSTPSLKDYSYEQVWEMHPDQFQEFAEVLKKKAV----QKPS-E 89 
jgi:Ppro_3800   30 GWWWYDREPpkqd--------eekKEEKPADSPKKGRKYKSLKGITEEKMWNMDPQDLGELWDDMRARAF----RKPT-E 96 
Q2LU01          51 GWWWYEKIPl-------------eKRDRDEKVEDGKKRSPRLSDYTMEELWNMYPDDFQAVLMAFQKKAV----QVPS-E 112 Syntrophus ac...
jgi:Selin_1478  31 GFWWGERAQeeq----------pvTEETADKAPDLPAPPLRLSDFTPEELWTMPPSEFSELVEKFSHQAI----QFPT-E 95 
CCA93229        27 GYWWY--AP---------------PTRPEEPAAPDPDALIKPVIPPMGELATWTPPRIHKLIEQQRDYAA----TVLT-V 84 
BAK66670        34 GYWWY-ETP---------------KSGAEEEV--LQETVPKPVIPPMVELAKWSPPRIAKLIVEQRDYAA----TVLT-I 90 
WP_012675188   102 ETAEKFLAWQYQYFQHLQKIGFALREAYLAKGPQVYPIRgYPESELASKLYfNDYRKHLIAKAIKRLKNR-FGLIIFYSG 180 Persephonella...
Q6LW83          94 KKAEKLMLLNQFAYNMSSDFGMTFQKALLMNPDLSYTKD-RPTEQAARSTY-LQMEREKKIRAVRQLAGSgWGLFFVYEG 171 Photobacteriu...
WP_013908531    96 KNVTRWAIYMKAAREKSVRFAGSLSFVLLKHPELSYAPD-FPITYQASRAL-SRARYLKINSFLQKIRDR-FALILLVSS 172 Thermodesulfa...
WP_013681658    88 QNVKQYLILQDIARRKAYAFSNVVGYVTQTNPNLSLYKD-YPENSPGIRMR-TGLMNYDVDKTLKSNRDE-YALLFFYKP 164 Hippea maritima
jgi:Glov_0252   90 ENVKEYFEVQEIARKKALAFSNVAQFVWQKYPELTTKKD-YPITTPGNLAR-ISQINEERQRILRDNRDD-FALIYFQRP 166
jgi:Ppro_3800   97 SNVRDFWRVNEVTRKKAYAFTSASDFTWQRNPELTTKGD-YPISTPGRSAQ-VAMSEAEKRQTLANNQHN-YALVMFSKP 173
Q2LU01         113 NNVREYYVVQDIARRKSLAFANVSAAVMQKYPDLSVAAD-YPITAPGRNAE-VSQRTDEIKSRIRSAREE-FALIYFSSA 189 Syntrophus ac...
jgi:Selin_1478  96 ENAYAYLALNDISRRKALEFTNITSFVSQRYPEFSPGYD-HPTNVPGRQSL-LARQAQERQDVISSAANE-FGLLYFHDP 172
CCA93229        85 DAVADFWRLEDFARRKARAFAGLTQIAMLQHPELNSKSA-NPMVGDARSEL-AAWKDQVRRSYLRAHSNE-FALVMFSRA 161
BAK66670        91 DAVADFWRLQDFARRKARAFAGVTQLAMLTHPELNAKAA-NPMVGEARDAL-GAQKDQVRRQYLRAHAGE-FALVMFARE 167
WP_012675188   181 KCKVCQQELPILLGLRQIY-GITMRAVNVDGNMIDLPIKQVYNPQLAkQYGITRVPTVVAVLEKK--DGTVkqsVVGVGL 257 Persephonella...
Q6LW83         172 ASPMAEKLAPSVQQFADAH-GIEVLGISLDGTQLAs--IHQNRDNSN-HIQVPFSPALVLVNPNT--QEMK---PLAYGF 242 Photobacteriu...
WP_013908531   173 RSPLSEPAQKICRKFADET-GWKLVVVDADSRPD-IAK----------RLGAKYVPQAFIISRDPgiSPL----PVMAGA 236 Thermodesulfa...
WP_013681658   165 GCQYCEIQSQILRYLQDED-GWEIMPININQRYD-VAA----------RFNVKTVPEIILIHKGS--PQWI---PVAAGV 227 Hippea maritima
jgi:Glov_0252  167 DCSYCDEQSRILDWFTNET-GWTVKKVNISENPG-LAA----------KFSVEITPTLILIQKGN--QDYL---PVSAGV 229
jgi:Ppro_3800  174 GCRYCSEQEGILRWFTQST-GWTVKTVDISQNPS-MAS----------RFGVTITPTIILIQKGN--QDFF---PVTAGV 236
Q2LU01         190 GCPYCAEEGSILSRFVEKY-GWEIREIDIEREAA-VSS----------VFGIETTPTLLLIYRGS--ADHI---TVSAGV 252 Syntrophus ac...
jgi:Selin_1478 173 SCSACVAQEGILQFFNRKYpSWGIRPVNIRMEPY-AAA----------QFGVQRTPTIIAVHLQS--DEWL---PVTNGA 236
CCA93229       162 TCGYCRVEWPIVQRFQDEM-GWQVTLMDIDKRPD-LGQ----------RFGVEVTPTTMIIRRGS--KQRM---VIAAGV 224
BAK66670       168 SCGYCKVQWPIVQRFKDDM-GWQVSLMDLDRRPD-LKQ----------RFGVEVTPTTMVIRRGS--PQRM---VIAAGV 230
WP_012675188   258 MTADTILSMIT 268 Persephonella marina
Q6LW83         243 IAQEDLLGRFL 253 Photobacterium profundum
WP_013908531   237 EALPVLRQNVY 247 Thermodesulfatator indicus
WP_013681658   228 IALNNIKRNIY 238 Hippea maritima
jgi:Glov_0252  230 ISADEIEDKAY 240
jgi:Ppro_3800  237 ASADEITERTY 247
Q2LU01         253 ASLAELEEKLY 263 Syntrophus aciditrophicus SB
jgi:Selin_1478 237 ESLDNIEERLF 247
CCA93229       225 ETYPNLAQMAY 235
BAK66670       231 ESYPNLAQMAY 241
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap