Conserved Protein Domain Family
DNA_pol3_chi

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pfam04364: DNA_pol3_chi 
DNA polymerase III chi subunit, HolC
The DNA polymerase III holoenzyme (EC:2.7.7.7) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either either the tau or gamma product of gene dnax, complexed to delta.delta' and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta' allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi.
Statistics
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PSSM-Id: 461276
Aligned: 198 rows
Threshold Bit Score: 76.4431
Created: 22-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_010847685             1 MKNATFYLLeklpsekrlpeqssfsdDLQPHEWMACQLAADQWRAGKRVLIACESQQQAEKLDEALWQREPSQFVPH--- 77  Xenor...
IGS:MICA_186             1 MSEIRFYHL-----------------QTQDLGQALPQVLTKAIAGGKRVVIRLPNDDIAEKMAAHLWTYNPDSFLPH--- 60 
CCA92923                 1 -mRVDFYQL-----------------SRDPAEVALPLIAGKVVGSGERLLVVSADGEQRKRIRQALWSAGPDTFLAN--- 59 
PRJNA213647:NX02_12330   1 -mQVDFYHL-----------------TVRPVEAVLPRIADRVLESGARLLVVSADEAQRERIDGALWTQDKESFLPH--- 59 
WP_015457315             1 -mQVDFYHL-----------------ASSPIERVLPRIAERLLVDGARLLVVCADDGQAARLDQQLWTYAADSFLPH--- 59  Sphin...
dbos:SAR116_0629         1 MSKIDFYHL-----------------TQTDMETVLLMLLKKTLAAGKKALILCPQPA-ASALDTDLWTREPDSWFAH--- 59 
Q6MCC4                  13 kSKVYFFNVk----------------DNQAKIHLICSKAKESFEQEKRLQILVPTIEAGQYIDSLLWRYPEDSFLTHtlt 76  Candi...
CCB88791                10 tKRVTFFQVt----------------SDQMKRNRIVSVAHEYFEKKQPLLFKLPHKKALEYLDFLLWRLPQDSFLPHvik 73 
INMI:Cabys_74            1 MQKIIFIEL-----------------PVARKEQYVTDITESLFALNKSIHIFAQKNN-LVALDRLLWVRKPDSFLPH--- 59 
Q3A4B4                   1 MTRVEFVKI-----------------KRPEKAKHLCELAEHFFTQGQRVLVMVCDDNQGVTLDRFMWTWKKGAFIPHvyd 63  Pelob...
WP_010847685            78 -NLAGEGPRYGA----P----VELCWPqkrSNA---PRDVLV-----TLL-PhFADFa-tAFHEVIDFVPIDEN-LKQLA 137 Xenor...
IGS:MICA_186            61 -GTKKDGFA-EDq---P----IYITAG----NDnpnKADLLItgmgvA-PdDv------dHFALVCEFLDGHDDaQIAAA 120
CCA92923                60 -GEVGDGQE-ERq---P----ILLSDA----PQpanGAKFMAiadgqWRE-Gs------ePFARTFYLFD---EsTVQQA 116
PRJNA213647:NX02_12330  60 -GLAGGAHD-ADq---P----VLIGAD----VAaanGARHVAlvdgeWRD-Aa------lDFDRAFHFFD---EaSIAAA 116
WP_015457315            60 -GRAGDGGE-ALq---P----VLIAAT----ADaanGARNIAladgiWRD-Ea------lAFDRAFHLFD---DgSIDAA 116 Sphin...
dbos:SAR116_0629        60 -GLDDADGQ-DIa---K----IWISTD---MAVnpiKAEFVFllhgsVPA-Ei------sQFERVFNLFDGRSEaQVQHA 120
Q6MCC4                  77 tNLS------------Pe--wIVITTEe--TVNl-nLAARLL-----NLC-P-HPIKyfsLFAEIYELYDESHPqKLENS 132 Candi...
CCB88791                74 --------------dtPcqdlIVLTSS---EENp-nGARSVF-----NLT-G-EPILn-pHFTTIYTFEDLSSTeKNTTA 127
INMI:Cabys_74           60 -AIFQESDQENPdlleP----ILLIDR----PVr-lTADVLIlhdplPVD-Qi------gSYEIIIDFAELYDQnRLKDS 122
Q3A4B4                  64 nGAVDCLDE-------P----VIIEVE---ERNp-nNAGVLImgkpcSLD-Fi------rQFDLVIDFAELYEPqLKVAA 121 Pelob...
WP_010847685           138 RERYKSYRSVGFNLT 152 Xenorhabdus nematophila
IGS:MICA_186           121 RQRWKTYKDAGHAIT 135
CCA92923               117 RGVWRELRSRegveh 131
PRJNA213647:NX02_12330 117 RTAWRALSGREGVEP 131
WP_015457315           117 RAAWKALAGredvvr 131 Sphingomonas sp. MM-1
dbos:SAR116_0629       121 RIQWKSWADLGtver 135
Q6MCC4                 133 KLRFKNYQDWGLALs 147 Candidatus Protochlamydia amoebophila UWE25
CCB88791               128 QKHYHAYKAHGYKIi 142
INMI:Cabys_74          123 RQRYKVFRDSGrfdl 137
Q3A4B4                 122 RKRYAHFRETGFEVA 136 Pelobacter carbinolicus DSM 2380
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