Conserved Protein Domain Family
vWA_norD_type

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cd01454: vWA_norD_type 
norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases. Denitrification plays a major role in completing the nitrogen cycle by converting nitrate or nitrite to nitrogen gas. The pathway for microbial denitrification has been established as NO3- ------> NO2- ------> NO -------> N2O ---------> N2. This reaction generally occurs under oxygen limiting conditions. Genetic and biochemical studies have shown that the first srep of the biochemical pathway is catalyzed by periplasmic nitrate reductases. This family is widely present in proteobacteria and firmicutes. This version of the domain is also present in some archaeal members. The function of the vWA domain in this sub-group is not known. Members of this subgroup have a conserved MIDAS motif.
Statistics
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PSSM-Id: 238731
Aligned: 21 rows
Threshold Bit Score: 123.205
Created: 1-Nov-2000
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
metal
Feature 1:metal ion-dependent adhesion site (MIDAS)
Evidence:
  • Comment:divalent cations are bound by the MIDAS motif

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1              # # #                                                                    
AAA68973    449 LAVSILLDVSRSTesavt--gravIEIEREALAALAWGLda-cgDRFAINAFSSl-----kRDRVFLSac------kDFD 514 Paracoccus denit...
NP_830440   432 VAFQLLVDCSGSMyn--------kMEETKKSVVLFHEALks-lkIPHAISGFWEdassakpEDKPNVIhe-----vvNYK 497 Bacillus cereus ...
P29934      411 TVVTLLIDNSGSMrg-------rpITVAATCADILARTLer-cgVKVEILGFTTkaw-kggQSREKWLaggkpqapgRLN 481 Pseudomonas deni...
NP_104641   411 TVVTLVLDNSGSMrg-------rpITVAATCADILARTLer-cgVSVEILGFTTraw-kggQAREKWLkdgkppnpgRLN 481 Mesorhizobium loti
NP_419489   405 TVVTLLIDNSGSMrg-------rpIMVAAICADILARTLer-cgVKTEVLGFTTraw-kggTSRDEWIkagkpaapgRLN 475 Caulobacter cres...
ZP_00097140 494 LAVALRIDESASMsaf------grLTAAKQAAVAVYEFCts-cgIPTLIYGDTAdr---spLERMSLYsy------iDYE 557 Desulfitobacteri...
ZP_00038024 558 LAVAVRIDESGSMird------drIEAAKKAAIAIAEFSkk-vdIPLLIYGDTAdr---ssREKTSLFsy------kEFE 621 Enterococcus fae...
ZP_00032321 402 CVVSFLIDCSGSMrt--------yIEPVAMLVDVLTRALdq-agVASEVLGFSTgaw-nggRARLDWLaagrphhpgRLN 471 Burkholderia fun...
AAL59705    377 AAVHLLVDISGSMgkpigegnrkyFHVANEAALALAMALegipgVVPAVSYFPGi------HQEVSIAl-------lPKQ 443 Vibrio cholerae
NP_758646   427 ASIQILLDKSGSMks--------aMDQAEAAVYAVLSALeglplVTTGAMSFPNkan--dgVERCALIk--------SPK 488 Pseudomonas resi...
Feature 1                                       #                           #                   
AAA68973    515 Epmg----------aaiERRIAGLRPRf---yTRLGAGIRHASAGLSAQASSRRLLLVITDGKPNDLDHYEGRH---GIE 578 Paracoccus denit...
NP_830440   498 Nstl----------pnvGPEIMQLREEe---dNRDGYIIRIVSEKLAKRPEKHKFLLVFTDGEPSALDYQQDGIl--DTH 562 Bacillus cereus ...
P29934      482 DlrhivyksadapwrraRRNLGLMMREgllkeNIDGEALIWAHERLMARREQRRILMMISDGAPVDDSTLSVNPg-nYLE 560 Pseudomonas deni...
NP_104641   482 DlrhiiyksadhpwrraRRNLGLMMREgllkeNIDGEALLWAHNRLIARPEQRKILMMISDGAPVDDSTLSVNPg-nYLE 560 Mesorhizobium loti
NP_419489   476 DlrhiiykaadapwrraRKNLGLMMREgllkeNIDGEALMWAHQRIIARPEQRRILMVISDGAPVDDSTLSVNSg-hYLE 554 Caulobacter cres...
ZP_00097140 558 Npsl-----------ndKYSLMAIQGHs---nNRDGMALRILSEKLLQAPQKTKLLISISDGQPKALPDYTGEV---ALA 620 Desulfitobacteri...
ZP_00038024 622 Dgfq----------wlnEKLVTMKPRQn----NRDGAALRLAAEKLNRQSATTKLLLNISDGQPKALPDYTGKK---AKE 684 Enterococcus fae...
ZP_00032321 472 EiahlvfkdaatswrraRADIAALFKAdlfreGVDGEAVDWACTRLRARGEARRILVVISDGSPMDSATAQVNDs-yYLD 550 Burkholderia fun...
AAL59705    444 Sv---------------RHRAACFDQKpr-gcTPMAQAMWFAANSLLAQKQKRKLMIVLTDGDPDDWAATHDIVd--RCR 505 Vibrio cholerae
NP_758646   489 Erlik---------avsEGGFGAMSEGg----TPLAQALWPAAVEVLRAKGEKKILFVITDGEPNAGTTHAAKEflqRCE 555 Pseudomonas resi...
Feature 1                                                                
AAA68973    579 DSam---aVREARRagHAVHGITVDRDa------------KSWFPRIFGQg-gFSLI 619 Paracoccus denitrificans
NP_830440   563 EA------VKLARKsgMEVIGIFIEEGeak-------eatYQLMKNIYNHh--FLVA 604 Bacillus cereus ATCC 14579
P29934      561 RHlravieQIETRSp-VELLAIGIGHDvtryyrravtivdADELAGAMTEq-lAALF 615 Pseudomonas denitrificans
NP_104641   561 RHlravieLIETRSp-VELLAIGIGHDvtryyrravtivdAEELAGAMTEq-lASLF 615 Mesorhizobium loti
NP_419489   555 RHlrqvitEIEGKSp-VELIAIGIGHDvtryyrravtivdVEQLGGVLVEq-lAALF 609 Caulobacter crescentus CB15
ZP_00097140 621 DMke---vIRDYSRq-GIVFLAAAIGQd------------KETLCDIYGPe-rYLDI 660 Desulfitobacterium hafniense
ZP_00038024 685 DIqs---vLKEYERq-GILFVSAAIGQd------------KEEIKSIYGEs-rFVDI 724 Enterococcus faecium
ZP_00032321 551 NHlkqvvaRNEAARd-VELLGLGVGLDlspyyrrclavdlSAPPDMALFGe-lAGWI 605 Burkholderia fungorum
AAL59705    506 RS------GFELLGigIQTRSVERFFPqsiv------indVKDLKRELFEvtqQLLI 550 Vibrio cholerae
NP_758646   556 VS------GIEVIGlgFGSANEHILKAlf---------sqYRAVGEVANLk--NSLF 595 Pseudomonas resinovorans

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