Conserved Protein Domain Family
7tmA_5-HT6

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cd15054: 7tmA_5-HT6 
serotonin receptor subtype 6, member of the class A family of seven-transmembrane G protein-coupled receptors
The 5-HT6 receptors are a subfamily of serotonin receptors that bind the neurotransmitter serotonin (5HT; 5-hydroxytryptamine) in the mammalian central nervous system (CNS). 5-HT6 receptors are selectively linked to G proteins of the G(s) family, which positively stimulate adenylate cyclase, causing cAMP formation and activation of protein kinase A. The 5-HT6 receptors mediates excitatory neurotransmission and are involved in learning and memory; thus they are promising targets for the treatment of cognitive impairment. All GPCRs have a common structural architecture comprising of seven-transmembrane (TM) alpha-helices interconnected by three extracellular and three intracellular loops. A general feature of GPCR signaling is agonist-induced conformational changes in the receptors, leading to activation of the heterotrimeric G proteins, which consist of the guanine nucleotide-binding G-alpha subunit and the dimeric G-beta-gamma subunits. The activated G proteins then bind to and activate numerous downstream effector proteins, which generate second messengers that mediate a broad range of cellular and physiological processes.
Statistics
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PSSM-Id: 320182
Aligned: 6 rows
Threshold Bit Score: 383
Created: 13-Nov-2008
Updated: 17-Oct-2022
Structure
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Aligned Rows:
  next features
Feature 1:putative ligand binding site [chemical binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                    #   #
XP_427576      23 SWVAAFLCFIILLTTAGNFLLILLIVTQRSlrntSNYFLVSLFMSDLMVGLVVMPPAMLNQLyghWVLRgdfCTLWYAFD 102  chicken
P50406         27 GWVAAALCVVIALTAAANSLLIALICTQPAlrntSNFFLVSLFTSDLMVGLVVMPPAMLNALygrWVLArglCLLWTAFD 106  human
P31388         27 GWVAAALCVVIVLTAAANSLLIVLICTQPAlrntSNFFLVSLFTSDLMVGLVVMPPAMLNALygrWVLArglCLLWTAFD 106  Norway rat
CAG01704       27 WLLAFMLAAIILVTVCGNLLLIALVFAHRSlrctSNCFLVSLFLSDLMVALVVMPPAMLNVLcgaWVLWpafCPIWLCFD 106  spotted green...
XP_002942005   20 VWMAAFLCLIILLTTVGNSLLILLIFTQRSlrntSNYFLVSLFMSDLMVGLVVMPPAMLNELygkWILDvdfCCIWYSFD 99   western clawe...
EEN69814      737 IATAAFLFLIAALTVVGNGLVLLAVAKHRSlqtlTNAFIMSLCVSDLLVGALVMPPAALTTLfgeWIFPqpfCPIWVSFD 816  Florida lancelet
Feature 1         #  ##                                                                           
XP_427576     103 VMCCSASILNLCVISLDRYLLIISPlKYKLRMTSCRALWLILATWTLAALASFLPIKLGWHklefevwsp---------- 172  chicken
P50406        107 VMCCSASILNLCLISLDRYLLILSPlRYKLRMTPLRALALVLGAWSLAALASFLPLLLGWHelghar------------- 173  human
P31388        107 VMCCSASILNLCLISLDRYLLILSPlRYKLRMTAPRALALILGAWSLAALASFLPLLLGWHelgkar------------- 173  Norway rat
CAG01704      107 VMCCSASILNLCVISLDRYLFIISPlRYKQRMTPPRALLLVGAAWGLAALASFLPIEMKWHslghwsrqpavpgpneani 186  spotted green...
XP_002942005  100 VMCCSASILNLCVISLDRYLLIISPlKYKLRMTSCRALCLILATWTLAALASFLPIELGWHeqdfeiqhm---------- 169  western clawe...
EEN69814      817 VMLCSASILNLCAISLDRFIQITNGlQHGTYMTRTRVAVLITVAWLLSILTSFPPINLGLHehagfptlt---------- 886  Florida lancelet
Feature 1                                   #      #  ##  #                                       
XP_427576     173 --------------nvtsrgdeeQCRLvVSLPYALVASCLTFFLPSAAISFTYCRILLAArkqavqvaslasnvatattd 238  chicken
P50406        174 ------------------ppvpgQCRLlASLPFVLVASGLTFFLPSGAICFTYCRILLAArkqavqvaslttgmasqase 235  human
P31388        174 ------------------tpapgQCRLlASLPFVLVASGVTFFLPSGAICFTYCRILLAArkqavqvaslttgtagqale 235  Norway rat
CAG01704      187 sayvdtlypnsyfqlspsgglsfQCRLrVTLPFALVASVLTFFLPSIAICFTYCRILLAArrqakrvaalshppyphpsl 266  spotted green...
XP_002942005  170 --------------nmtsgteekQCRLiVSLPYALVASCLTFFLPSVAISFTYCRILLAArkqavqvaslttnvpsased 235  western clawe...
EEN69814      887 --------------nltfltvtpQCIFdPNMTYALIGSIVTFYIPLTAILFTYGTIFREAkrqaarvaalnvqlr----- 947  Florida lancelet
Feature 1                                                                              #  ##  #   
XP_427576     239 esme----------------------qvphapsqpaagsesrrfankhsKKALKASLTLGILLGMFFVAWLPFFVTNVTQ 296  chicken
P50406        236 tlq------------------------vprtprpgvesadsrrlatkhsRKALKASLTLGILLGMFFVTWLPFFVANIVQ 291  human
P31388        236 tlq------------------------vprtprpgmesadsrrlatkhsRKALKASLTLGILLGMFFVTWLPFFVANIAQ 291  Norway rat
CAG01704      267 gepsrppssgavgglpqqdqddcsqqepqgsqnvppsvnserrlahrhgRRALKASLTLGVLLGLFFSTWLPFFITNMAQ 346  spotted green...
XP_002942005  236 -----------------------------htqvlalpavdsrkfvtkhsKKALKASLTLGILLGMFFVAWLPFFVANVVQ 286  western clawe...
EEN69814      948 -----------------------------------negrnnrgrtgangITSLKAIRTLGIILGAFMITWLPFFIANVVR 992  Florida lancelet
Feature 1                   #   #   #                     
XP_427576     297 AVCDCVPAGFFDVLTWLGYCNSTMNPIIYPLFMRDFKRAM 336  chicken
P50406        292 AVCDCISPGLFDVLTWLGYCNSTMNPIIYPLFMRDFKRAL 331  human
P31388        292 AVCDCISPGLFDVLTWLGYCNSTMNPIIYPLFMRDFKRAL 331  Norway rat
CAG01704      347 AVCECVPLALFDAITWLGYCNSTMNPIIYPLFMRDFKRAL 386  spotted green pufferfish
XP_002942005  287 AVCDCVPPGLFDLLTWLGYCNSTMNPIIYPLFMRDFKRAM 326  western clawed frog
EEN69814      993 PFCYCVSGQVFEVLTWLGWFNSALNPIIYPLFMKDFKRVF 1032 Florida lancelet

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