3J4Q


Conserved Protein Domain Family
AKAP7_RIRII_bdg

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pfam10470: AKAP7_RIRII_bdg 
PKA-RI-RII subunit binding domain of A-kinase anchor protein
AKAP7_RIRII_bdg is the C-terminal domain of the cyclic AMP-dependent protein kinase A, PKA, anchor protein AKAP7. This protein anchors PKA, for its role in regulating PKA-mediated gene transcription in both somatic cells and oocytes, by binding to its regulatory subunits, RI and RII, hence being known as a dual-specific AKAP. The 25 crucial amino acids of RII-binding domains in general form structurally conserved amphipathic helices with unrelated sequences; hydrophobic amino acid residues form the backbone of the interaction and hydrogen bond- and salt-bridge-forming amino acid residues increase the affinity of the interaction. The N-terminus, of family AKAP7_NLS, carries the nuclear localization signal.
Statistics
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PSSM-Id: 463101
Aligned: 7 rows
Threshold Bit Score: 77.3063
Created: 23-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3J4Q_A       295 EPEDAELVRLSKRLVENAVLKAVQQYLEETQNKKQPGE-GNSVKAEEGDRNG-DGSDN 350
XP_008993323  23 EPDDAELVRLSKRLVENAVLKAVQQYLEETQNKNKPGE-GSSVKTEAADRNG-NDNEN 78 
XP_003215759 257 EPDDAELLSLSKRLVENAVLKAVQQYLEETQNKNRQLDfGAPVKTEEPTLG--NNMEN 312
XP_009872654   6 EPDDAELVSLSKRLVENAVLKAVQQYLEETQNKTRQTD-GSPVKTEEAASGSkNESDN 62 
O55074        23 EPEDAELVRLSKRLVENAVLKAVQQYLEETQNKKQPGE-GNSTKAEEGDRNG-DGSDN 78  house mouse
XP_005615711 268 EPDDAELLRLSKRLVENAVLKAVQQYLEETQSRGKPAD-GSSGKARAADRGGaDGDQs 324
XP_010705717   9 EPDDAELVSLSKRLVENAVLKAVQQYLEETQNKARQTD-GSPLKAEEAASGTkNESNN 65 
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