Conserved Protein Domain Family
CYP93

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cd20655: CYP93 
cytochrome P450 family 93
The cytochrome P450 family 93 (CYP93) is specifically found in flowering plants and could be classified into ten subfamilies, CYP93A-K. CYP93A appears to be the ancestor that was derived in flowering plants, and the remaining subfamiles show lineage-specific distribution: CYP93B and CYP93C are present in dicots; CYP93F is distributed only in Poaceae; CYP93G and CYP93J are monocot-specific; CYP93E is unique to legumes; CYP93H and CYP93K are only found in Aquilegia coerulea; and CYP93D is Brassicaceae-specific. Members of this family include: Glycyrrhiza echinata CYP93B1, also called licodione synthase (EC 1.14.14.140), that catalyzes the formation of licodione and 2-hydroxynaringenin from (2S)-liquiritigenin and (2S)-naringenin, respectively; and Glycine max CYP93A1, also called 3,9-dihydroxypterocarpan 6A-monooxygenase (EC 1.14.14.93), that is involved in the biosynthesis of the phytoalexin glyceollin. CYP93 belongs to the large cytochrome P450 (P450, CYP) superfamily of heme-containing proteins that catalyze a variety of oxidative reactions of a large number of structurally different endogenous and exogenous compounds in organisms from all major domains of life. CYPs bind their diverse ligands in a buried, hydrophobic active site, which is accessed through a substrate access channel formed by two flexible helices and their connecting loop.
Statistics
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PSSM-Id: 410748
Aligned: 33 rows
Threshold Bit Score: 645.422
Created: 16-Aug-2017
Updated: 25-Oct-2021
Structure
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Aligned Rows:
 
heme bindingputative
Feature 1:heme binding site [chemical binding site]
Evidence:
  • Comment:based on the structure of Salvia miltiorrhiza CYP76AH1 with bound heme (5YM3), defined at 4A contacts

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                           #                           #   #       #    
Q42798        61 GPIMQLFLGsvPCVVASTAEAAKEFLKTHEINFSNRPgqnvavkglaydsqdflFAFAPFGPYWKFMKKLCMSELLSgrm 140 soybean
P93149        65 GPLFSLNFGsvLCVVASTPHFAKQLLQTNELAFNCRIestavkk----ltyessLAFAPYGDYWRFIKKLSMNELLGsrs 140 Glycyrrhiza ech...
AAB88649      73 GPLMEIRLGasKCVVVSSSSVAREIFKEQELNFSSRPefgsaey---fkyrgsrFVLAQYGDYWRFMKKLCMTKLLAvpq 149 thale cress
NP_680150     63 GPLMTIRIGslRVLVVSDSDTAKLILKTHDPDFASKFvfgprqf---nvykgseFFNAPYGSYWRFMKKLCMTKLFAgyq 139 thale cress
XP_003537188  67 GPLVYLLFGskPCVLVSSPEMARQCLKTHETCFLNRPkrtnldy---itygssdFVLAPYGPYWSFMKRLCMTELLGgrm 143 soybean
NP_001241129  68 GPLLSLRIGsvKFIVASTPSLAKEFLKTNELTYSSRKmnmaint---vtyhnatFAFAPYDTYWKFMKKLSTTELLGnkt 144 soybean
Q9XHC6        66 GPLIHVMIGskHVVVASSAETAKQILKTSEEAFCNRPlmiases---ltygaadYFFIPYGTYWRFLKKLCMTELLSgkt 142 Glycine max
Q9SXS3        68 GPLYSLYFGsmPTVVASTPELFKLFLQTHEASSFNTRfqtsair---rltydnsVAMVPFGPYWKFIRKLIMNDLLNatt 144 Glycyrrhiza ech...
Q9SWR5        68 GPLFSLYFGsmPTVVASTPELFKLFLQTHEATSFNTRfqtsair---rltydssVAMVPFGPYWKFVRKLIMNDLLNatt 144 Glycine max
Q0JFI2        75 GPLMHVRLGstHCVVASSAEVAAELIRSHEAKISERPltavarq---fayesagFAFAPYSPHWRFMKRLCMSELLGprt 151 Japanese rice
Feature 1                                                   #                                    
Q42798       141 mdqFLPVRQQETKRFISRVFrkgvage-avdfgdELMTLSNNIVSRMTLSqkts-endnQAEEMKKLVSNIAELMGKfnv 218 soybean
P93149       141 innFQHLRAQETHQLLRLLSnrarafe-avniteELLKLTNNVISIMMVG---------EAEEARDVVRDVTEIFGEfnv 210 Glycyrrhiza ech...
AAB88649     150 lekFADIREEEKLKLVDSVAkccregl-pcdlssQFIKYTNNVICRMAMStrcs-gtdnEAEEIRELVKKSLELAGKisv 227 thale cress
NP_680150    140 ldrFVDIREEETLALLSTLVersrnge-acdlglEFTALTTKILSKMVMGkrcr-qnsnIPKEIRKIVSDIMACATRfgf 217 thale cress
XP_003537188 144 lhqHLPIREEETKLFFKSMMkkacfge-evnigkELAMLANNIITRMALGrrccddvegEGDQLIELVKEMTELGGKfnl 222 soybean
NP_001241129 145 lghFLPIRTQEVHDFIQILFhkskaqe-svnlteALLRLSNNVISRMMLSikss-gtdsQAEQARALVREVTRIFGEfnv 222 soybean
Q9XHC6       143 lehFVRIRESEVEAFLKRMMeisgngnyevvmrkELITHTNNIITRMIMGkksn-aendEVARLRKVVREVGELLGAfnl 221 Glycine max
Q9SXS3       145 vnkLRPLRSQEIRKVLRVMAqsaesqv-plnvteELLKWTNSTISRMMLG---------EAEEIRDIARDVLKIFGEysl 214 Glycyrrhiza ech...
Q9SWR5       145 vnkLRPLRTQQIRKFLRVMAqgaeaqk-pldlteELLKWTNSTISMMMLG---------EAEEIRDIAREVLKIFGEysl 214 Glycine max
Q0JFI2       152 veqLRPVRRAGLVSLLRHVLsqpeae--avdltrELIRMSNTSIIRMAAStvp----ssVTEEAQELVKVVAELVGAfna 225 Japanese rice
Feature 1                                                                                        
Q42798       219 SDFIWYLKPFDLqgfNRKIKETRDRFDVVVDGIIKQRQEERRKnketgta------kqfkdmLDVLLDMHEDenaEIKLD 292 soybean
P93149       211 SDFIWLFKKMDLqgfGKRIEDLFQRFDTLVERIISKREQTRKDrrrngkkgeqgsgdgirdfLDILLDCTEDensEIKIQ 290 Glycyrrhiza ech...
AAB88649     228 GDVLGPLKVMDFsgnGKKLVAVMEKYDLLVERIMKEREAKAKKkdgt-----------rkdiLDILLETYRDptaEMKIT 296 thale cress
NP_680150    218 MELFGPLRDLDLfgnGKKLRSSIWRYDELVEKILKEYENDKSNeeeek----------dkdiVDILLDTYNDpkaELRLT 287 thale cress
XP_003537188 223 GDMLWFVKRLDLqgfGKRLESVRSRYDAIMEKIMKEHEDARKKemggde--------avrdlLDILLDIYNDessEIGLT 294 soybean
NP_001241129 223 SDFLGFCKNMDLqsfRKRALDIHKRYDALLEKIISDREELRRKskeegcedg--gdekvkdfLDILLDVSEQkecEVQLT 300 soybean
Q9XHC6       222 GDVIGFMRPLDLqgfGKKNMETHHKVDAMMEKVLREHEEARAKedadsd--------rkkdlFDILLNLIEAdgaDNKLT 293 Glycine max
Q9SXS3       215 TDFIWPLKKLKVgqyEKRIDDIFNRFDPVIERVIKKRQEIRKKrkerngeie--egeqsvvfLDTLLDFAEDetmEIKIT 292 Glycyrrhiza ech...
Q9SWR5       215 TDFIWPLKHLKVgkyEKRIDDILNKFDPVVERVIKKRREIVRRrkngevve----gevsgvfLDTLLEFAEDetmEIKIT 290 Glycine max
Q0JFI2       226 DDYIALCRGWDLqglGRRAADVHKRFDALLEEMIRHKEEARMRkktdtd-------vgskdlLDILLDKAEDgaaEVKLT 298 Japanese rice
Feature 1                  #  ##  ##                                                           # 
Q42798       293 KKNIKAFIMDIFVAGTDTSAVSIEWAMAELINNpdVLEKARQEIDAVVGksrm-veesDIANLPYLQAIVRETLRLHPGg 371 soybean
P93149       291 RVHIKALIMDFFTAGTDTTAISTEWALVELVKKpsVLQKVREEIDNVVGkdrl-veesDCPNLPYLQAILKETFRLHPPv 369 Glycyrrhiza ech...
AAB88649     297 RNDMKSFLLDVFMAGTDTSAAAMQWAMGQLINHpqAFNKLREEINNVVGskrl-vkesDVPNLPYLRAVLRETLRLHPSa 375 thale cress
NP_680150    288 MNQIKFFILELFMASLDTTSAALQWTMTELINHpdIFAKIRDEIKSVVGttnrlikesDLQKLPYLQAAIKETLRLHPVg 367 thale cress
XP_003537188 295 RENIKAFIMNMFGAGTETSATTIEWALAELINHpdIMLKARQEIDSVVGknrl-veesDILNLPYVQSIVKETMRLHPTg 373 soybean
NP_001241129 301 RNHVKSLILDYFTAATDTTAISVEWTIAELFNNpkVLKKAQEEVEKVTGnkrl-vceaDISNLPYIHAIIKETMRLHPPi 379 soybean
Q9XHC6       294 RESAKAFALDMFIAGTNGPASVLEWSLAELVRNphVFKKAREEIESVVGkerl-vkesDIPNLPYLQAVLKETLRLHPPt 372 Glycine max
Q9SXS3       293 KEQIKGLVVDFFSAGTDSTAVATDWALSELINNprVFQKAREEIDAVVGkdrl-vdeaDVQNLPYIRSIVKETFRMHPPl 371 Glycyrrhiza ech...
Q9SWR5       291 KDHIKGLVVDFFSAGTDSTAVATEWALAELINNpkVLEKAREEVYSVVGkdrl-vdevDTQNLPYIRAIVKETFRMHPPl 369 Glycine max
Q0JFI2       299 RDNIKAFIIDVVTAGSDTSAAMVEWMVAELMNHpeALRKVREEIEAVVGrdri-agegDLPRLPYLQAAYKETLRLRPAa 377 Japanese rice
Feature 1         ## #                                                                         ##
Q42798       372 PLVVRESSKSAVVcgYDIPAKTRLFVNVWAIGRDPnhWEKPFEFRPERFirdgqnq-----------ldvrgqhYHFIPF 440 soybean
P93149       370 PMVTRRCVAECTVenYVIPEDSLLFVNVWSIGRNPkfWDNPLEFRPERFlklegdssg--------vvdvrgshFQLLPF 441 Glycyrrhiza ech...
AAB88649     376 PLIIRECAEDCQVngCLVKSKTRVLVNVYAIMRDSelWADADRFIPERFlesseekige------hqmqfkgqnFRYLPF 449 thale cress
NP_680150    368 PLLRRESNTDMKIngYDVKSGTKIFINAYGIMRDPttYKDPDKFMPERFlvveqdterkmgyyqqymlelkgqdVNYLAF 447 thale cress
XP_003537188 374 PLIVRQSTEDCNVngYDIPAMTTLFVNVWAIGRDPnyWENPLEFKPERFlneegqsp----------ldlkgqhFELLSF 443 soybean
NP_001241129 380 PMITRKGIEDCVVngNMIPKGSIVCVNIWAMGRDPniWKNPLEFMPERFlegegsa-----------idtkghhFELLPF 448 soybean
Q9XHC6       373 PIFAREAMRTCQVegYDIPENSTILISTWAIGRDPnyWDDALEYKPERFlfsddpgks--------kidvrgqyYQLLPF 444 Glycine max
Q9SXS3       372 PVVKRKCVQECEVdgYVIPEGALILFNVWAVGRDPkyWDRPTEFRPERFlenvgegdq--------avdlrgqhFQLLPF 443 Glycyrrhiza ech...
Q9SWR5       370 PVVKRKCTEECEIngYVIPEGALILFNVWQVGRDPkyWDRPSEFRPERFletgaegea-------gpldlrgqhFQLLPF 442 Glycine max
Q0JFI2       378 PIAHRQSTEEIQIrgFRVPAQTAVFINVWAIGRDPayWEEPLEFRPERFlaggggeg----------veprgqhFQFMPF 447 Japanese rice
Feature 1        ##  #####  ##                                                              
Q42798       441 GSGrRTCPGASLAWQVVPVNLAIIIQCFQWkl--------vgGNGKVDMEEKSGi--------TLPRANPIICVP 499 soybean
P93149       442 GSGrRMCPGVSLAMQEVPALLGAIIQCFDFhvvgpkgeilkgDDIVINVDERPGl--------TAPRAHNLVCVP 508 Glycyrrhiza echinata
AAB88649     450 GSGrRGCPGASLAMNVMHIGVGSLVQRFDWks---------vDGQKVDLSQGSGf--------SAEMARPLVCNP 507 thale cress
NP_680150    448 GSGrRGCLGASHASLVLSLTIGSLVQCFNWtv--------kgDEDKIKIKLPTGfsasgtaggSSLMCSPELCFD 514 thale cress
XP_003537188 444 GAGrRSCPGASLALQIIPNTLAGMIQCFEWkvg-------eeGKGMVDMEEGPGm--------ALPRAHPLQCFP 503 soybean
NP_001241129 449 GSGrRGCPGMPLAMRELPTFIGALILCFEWkmfgsqgeildhGKSLINMDERPGl--------TAPRANDLIGIP 515 soybean
Q9XHC6       445 GSGrRSCPGASLALLVMQATLASLIQCFDWivn-------dgKNHHVDMSEEGRv--------TVFLAKPLKCKP 504 Glycine max
Q9SXS3       444 GSGrRMCPGVNLATAGMATLLASVIQCFDLsvvgpqgkilkgNDAKVSMEERAGl--------TVPRAHNLICVP 510 Glycyrrhiza echinata
Q9SWR5       443 GSGrRMCPGVNLATSGMATLLASLIQCFDLqvlgpqgqilkgGDAKVSMEERAGl--------TVPRAHSLVCVP 509 Glycine max
Q0JFI2       448 GSGrRGCPGMGLALQSVPAVVAALLQCFDWqc---------mDNKLIDMEEADGl--------VCARKHRLLLHA 505 Japanese rice

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