4V6X


Conserved Protein Domain Family
HABP4_PAI-RBP1

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pfam04774: HABP4_PAI-RBP1 
Hyaluronan / mRNA binding family
This family includes the HABP4 family of hyaluronan-binding proteins, and the PAI-1 mRNA-binding protein, PAI-RBP1. HABP4 has been observed to bind hyaluronan (a glucosaminoglycan), but it is not known whether this is its primary role in vivo. It has also been observed to bind RNA, but with a lower affinity than that for hyaluronan. PAI-1 mRNA-binding protein specifically binds the mRNA of type-1 plasminogen activator inhibitor (PAI-1), and is thought to be involved in regulation of mRNA stability. However, in both cases, the sequence motifs predicted to be important for ligand binding are not conserved throughout the family, so it is not known whether members of this family share a common function.
Statistics
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PSSM-Id: 461421
Aligned: 70 rows
Threshold Bit Score: 55.4529
Created: 22-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4V6X_Ah      189 GKREFDRHSGSDRssfshysglKHEDKRGGSGSHNWGTVKDELTESPKYIQKQI-SYNYSDLDQSNvt-------eeTPE 260
XP_007390441 107 GRRPFDRHSATGK---------TDSEKKVHQG---WGGDEGTAELKAETAAE-------KDAQAEAgnpia---egwgAE 164
XP_003435815 209 GKRELDRQSGSNKtg------iKAVDKRDGAGSHNWGSSKQDAKEYSNNPDQDFqPQDADTSae------------aNAE 270
Q16ZT8       183 GKREFDRQSGSNKtg------vKAVEKRDGTGSHNWGSAKLDAKEFNNFQEE----YMPhe---------------aEEE 237 yellow fever mo...
AGO02039     175 GKREFDRRSGSDKtg------vKSVDKREGAGPHNWGTIKDDLDELNKTGSEge----------------------tTEE 226
EEB10309     246 GKREFDRKSGSDKtg------vKAMEKREGGGAHNWGNHKDDLEAVNLns--------------------------tNAS 293
EFX80179     187 GKRDFDRQSGSDKsg------vKPIEKREGSGPHNWGSVQDEIEGQLEP---------------AVaeevvegeaevVAP 245
EFA12812     125 GKREFDRQSGSDKtg------vKPIDKRDGAGAHNWGSHKDVIEEADKP----------NDADQSWsend---rpetNAA 185
7_pfamImport   1 GKRQFDRQSGSDKtg------vKAVEKRNGAGAHNWGSVKQDIDMNLETMAK-----DPqn---------------tTTD 54 
XP_011406826 228 GKREFERRSGSDKss------vKAFDKREGGGAHNWGTVKDDMNTNEWATDEQEaATDNNATELNEen--------tNDQ 293
4V6X_Ah      261 GEEHHPVADTENKEnevee---------------vkeeGPKEMTLDEWKAIQNKDR-AKVEF-NIRKPNE 313
XP_007390441 165 ASTDAWAAPAEGAEgaevvegttpaegekaegrrreeeEDNTLTLDEYFKQQKEKQlEIIPQlETRKANE 234
XP_003435815 271 RTNVSNGGEEAGADgaaag---------------rsddEAKEMTLDEWKAQKAAAR-LKPQY-NLRKAGE 323
Q16ZT8       238 KGQASDQTKEEQTEqsdak---------------pveeELKEMTLDEWKAQIAAAR-SKPQY-NIRKAGE 290 yellow fever mosquito
AGO02039     227 KAPEAGAGDGQVPEterav---------------paeeEPRELTLDEYKALRNAQR-TAPQY-NLRKAGE 279
EEB10309     294 EENAEWSEGKPGNNdvgennan--------gepvqveeEPKELTLDEYRA-LRGKR-ELPQY-NIRKAGE 352
EFX80179     246 AETAEVKEGEETAPvap------------------edeEPKELTLDEWRA-LRGER-KKPEF-NIRKPGE 294
EFA12812     186 PETKEETENETPVEe-----------------------EPKELTLDEWKA-QRAGR-AKPQF-NIRKAGE 229
7_pfamImport  55 EEQKESAGQKEESIv-----------------------EPKVLTLDEWKAQQELKRgAKPQY-NIRKAGE 100
XP_011406826 294 SEVVEGEGETESKVapgseeke--------geeeeeekETPQFTLDEYKAMQDKKR-TVPLH-KERRPGE 353
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