Conserved Protein Domain Family
glycyl_YjjI

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TIGR04040: glycyl_YjjI 
glycine radical enzyme, YjjI family
Members of this family are homologs to enzymes known to undergo activation by a radical SAM protein to create an active site glycyl radical. This family appears to be activated by the YjjW radical SAM protein, usually encoded by an adjacent gene. [Unknown function, Enzymes of unknown specificity]
Statistics
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PSSM-Id: 274937
Aligned: 11 rows
Threshold Bit Score: 840.846
Created: 9-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_005687007   6 QDILDTVKANNLTYHQKLMTLGNIAERLFDPRNLlgyTDEEWGFLQNQMICDLCEGYAIYRPRYILPDYNVYIQKGCEFL 85  Haemophilus inf...
WP_011590291  11 NRVLDILKDRSLTYHQQIKDLAAYAESTIEVLNI---DDETKKLIDEGCICTLFEGNAPFRPRYIIPDYSLLMEKGCEFL 87  Clostridium per...
WP_011755330   8 RQARETVDDPTLTFRQRMHRLATLAENSLEPPEV---SAACAEALDKRIICDMYEGNAPHRPRYLLPDFALLLRNGSAFL 84  Nocardioides sp...
WP_001111698  11 QRCQQIVTSPVLTPEQKRHFLALEAENALPYPTL---QEDARQALDEGVICDMFEGHAPFKPRYVLPDYARFLANGSQWL 87  Salmonella ente...
WP_005313665   5 ETCQRIVRDPLLSPAQKNHALALAAENALPYPEL---PPAVAEALAQGFLCDMFEGHAPYKPRYVLPDYAKFLSQGSAWL 81  Aeromonas salmo...
WP_011080152  10 DRFRQIINDPKLTVKQKNQFLALEAEALLDYMPV---SDGVQSAMKQGVICDMFEGNAPFKPRYVLPDYARYLSQGSAFL 86  Vibrio vulnificus
WP_012157134   5 NRLAQITRDPNLSPKQKSNFLALEAEASLPYMAI---SDAVSEAKNSGIICDMFEGNAPFKPRYVLPDYAKFLQNGSEYL 81  Shewanella peal...
WP_011343802  14 NRVYEIITDTSLDYKDKRHLLAAEAENSLPYVKI---SEKAQQYFSQGILCDLFEGHAPYRPRYILPDYQKFMEKGSEYL 90  Carboxydothermu...
WP_012064669   6 SEILETIKSKNLNYQQKHHILANIAERIVDPMEVlhyTTEEMQTIENSMICDLNEGYGVYRPRYIVPDYAVFSEKGCKYL 85  Alkaliphilus me...
WP_006807750   3 DQILSIIKNRVLTYEQKLRTLAGAAEGTLSVLNI---TPDIQEYRDKGIICDLFEGNAPYRARYITPDYEKFMKQGSKFL 79  Leptotrichia go...
WP_012048409   5 DNTLNIIKNKTLTYEQKVLSLAREAENSLDVLNL---PSDVQSLRDEGVICDLNEGNAPYRPRYICPDYEKFMKQGSEFL 81  Clostridium bot...
WP_005687007  86 ELPPPKDLDEALDGLLILYSHVPSITTYPVYIGRLDVLLEPFIT--DEEKDYIKIKRFLNHIDKTVPDSFCHANIGPYDT 163 Haemophilus inf...
WP_011590291  88 NLSVPEDIWEATNNLLIFYKHVPSITTFPVYLGNIDELLEPFIE--DEREAKRAIKLFLKHIDRTLTDSFVHANIGPRET 165 Clostridium per...
WP_011755330  85 ELGPATDLDEALATLLIGYSQVPSITGYPVWLGDLDALLEPYVEgvSEEELHRKLRLFWISLDRMFPDAFTHANLGPDDS 164 Nocardioides sp...
WP_001111698  88 ELEGAKDLDDALSLLTILYHHVPSVTSMPVYLGQLDALLQPHVRilTQNEIDIRIKRFWRYLDRTLPDAFMHANIGPADT 167 Salmonella ente...
WP_005313665  82 ELAPPKDFDEALDALRILYHHVPSVTGMPVWLGRLDHLLLPFVGelDDEALHRKLKGFWIYLDRVLPDAFMHVNIGPDDN 161 Aeromonas salmo...
WP_011080152  87 ELDAANDFDDALNMLTVLYHHVPSVTNIPVYLGQLDELLMPYVGqlSDTQIYQKLRRFWIMLDRTLPDAFMHANIGPSDN 166 Vibrio vulnificus
WP_012157134  82 ELSPAQDLDEALNALTIIYHHVPSVTNIPVYLGQLDDILLPFCQglEPEAIYRKLKLFWIMLDRTLPDAFMHVNIGPTDN 161 Shewanella peal...
WP_011343802  91 NLKPPQDLFEAVNALLIIYRYVPSITSYPVYLGQVDEHLEPFVLaaGEELSEKLLKMFLVQIDRVLPDGFVHMNIGPKDT 170 Carboxydothermu...
WP_012064669  86 ELEPPTDIDELLDGLLILYSHVPSITSFPVFVGQLDQLIEPFIT--NEDEDYIKIKRFLNHIDKTVPDSFCHGNIGPKAT 163 Alkaliphilus me...
WP_006807750  80 ELEPAKDIWEATTNLLILYNHVPSITSYPVYLGNIDMLLEPYIK--NEEEAYKAIKLFLLQIDRTITDSFCHANLGPEKT 157 Leptotrichia go...
WP_012048409  82 NLNPPKDIWEATNNLLILYKHVPSITSMPVYIGNIDTLLDPFIS--DENEAYNAIKLFLLHIDRTITDSFCHANIGPKET 159 Clostridium bot...
WP_005687007 164 KAGRLILRAVIELEAPTPNMTIRYDKSKTSREFAELAAKACLLVSKPSFANDAYYISDLG-EEYGVASCYNALPECGGAY 242 Haemophilus inf...
WP_011590291 166 VAGRLILESMDELQCAVPNLSMKYDLENTPESFINLCAKVALSTAKPSFANHKMDVKSFGtDRYAIASCYNGFHIGGGGY 245 Clostridium per...
WP_011755330 165 RVGRMALRLERELLQVVPNLSLKVDPERTPDDYVRDAVETVFACGKPHFVNHPMMVGDLG-AAYGVVSCYNSLVAGGGSH 243 Nocardioides sp...
WP_001111698 168 PVTRAILRADAELNQVAPNLTFIYDAEITPDDLLLEVAKNICECSKPHISNGPVNDKIFTkGHYGIVSCYNSLPLGGGGS 247 Salmonella ente...
WP_005313665 162 RLCRLILRIDGELKQVAPNLTLFHDPAQTPDNLLMLAVQNIASCSKPHIANYPLHSNTFDqRGFGIVSCYNALPQAGGAN 241 Aeromonas salmo...
WP_011080152 167 LICRTILRIDAELKQIAPNLTFMYDPKVTPDDLLRVACANICECSKPHIANYPMHAQTYGdKQFGIVSCYNSLPLAGGAN 246 Vibrio vulnificus
WP_012157134 162 IVCRTILRVDAELKQIAPNLTFMYDPEITPDELLQVAASNICECSKPHIANYPLHANSFDdKGFGIVSCYNSLPLAGGAN 241 Shewanella peal...
WP_011343802 171 RTGRLILKLERELKQAVPNISLKYNEE-TPDSFAIEAVKTALEIGKPYFVNDRELKEDLD-PAYGVASCYNTLLIGGGSF 248 Carboxydothermu...
WP_012064669 164 RAGALILKAVMALKNPTPNLTIKYNQDITEREFARLAVKAALLAAKPSFSNDLGYIKDVG--EHGIVSCYNALPIGGGAY 241 Alkaliphilus me...
WP_006807750 158 KAGEMILRATVELNTMTPNLTLKYDEDITPDDFAIQCVETSLKVAKPSFSNYKMFQKDFYgKDYAIASCYNGLSIGGGAY 237 Leptotrichia go...
WP_012048409 160 KAGRLILKAQRELQTAIPNITLKYGKE-TSKEFAIDSINTALITAKPSFANHEIFSKDFPyNNYGIASCYNGLYIGGGSF 238 Clostridium bot...
WP_005687007 243 TLTRLRLGTIARACKS-ADEMVNELLPRVAKCALSTMDKRHKFVVEESNFFNSSFLEKEGFIKRTNFTGMFAIVGLADAT 321 Haemophilus inf...
WP_011590291 246 TLVRIKLNEVAKKATS-VEDFLENVLPYVSTKMIQYIDERIRFLVEETQFFTSNFLVKEGFIQKKLFTGMFGVVGLAEAV 324 Clostridium per...
WP_011755330 244 TLTRLNLREVALRHEGeRTSFLDELLPRYVELTAELMEARIRHLVEEARFFEHSWLVTDGLLHLDRYAAMFGVYGLAEAV 323 Nocardioides sp...
WP_001111698 248 TLVRLNLKAVAERSTS-VDDFFSRTLPHYCRQQIAIINSRCEFLYEKSHFFENSFLVQEGLIDPERFAPMFGMYGLAEAV 326 Salmonella ente...
WP_005313665 242 TLVRLSLKRVAEQAHG-IDDFMGCLLPHYCRLASQLIGARAAFLHQESGFFD-SFLVQEGLIDEDRFVPMFGIYGMAEAV 319 Aeromonas salmo...
WP_011080152 247 TLVRLNLKEVAQRAES-VSDFMQAVLPSYVDLAIELIDARTTYLHEQSGFFT-SFLVEEKLIDEQRFAPMFGIYGMAEAV 324 Vibrio vulnificus
WP_012157134 242 TLVRLNLKQVALKASS-VGDFFTQVLPHYCQLTYELIDARAKFLHEESNFFN-SFLVKEGLIEESRFAPMFGIYGMAEAV 319 Shewanella peal...
WP_011343802 249 TLVRLNLKEAAKKARD-FQDFIRNVLPDAVLAQAEVINARAKFIVEEAKFFETSFLAKEGLISLARFTSMAGYFGLYECI 327 Carboxydothermu...
WP_012064669 242 TLLRLRLGTIAKSCDS-REGLIKEALPYLSKTMFSMMDKRIQFIVEESNFFESSFLEKEGFINSENFTAMFAIVGLAEAV 320 Alkaliphilus me...
WP_006807750 238 TLVRLNLAKLADEAKD-EEDLLNNKLPDAVNKMARFMDERIRFLVEESGFFESSFLAKEDLIYRDRFSGMFGMVGLAECV 316 Leptotrichia go...
WP_012048409 239 TLVRLNLYGAAKKASS-IEDFLDNVLPNVMTKMSNYIDKRINFIVNESNFFESSFLVREKLIHKDRFTAMFGMFGLAECV 317 Clostridium bot...
WP_005687007 322 NHLLQCEGLNE--------TFGKSVRGDEIATAIMDKLKKITDAHEGVYAERTGNRYLLHAQVGASNheeDKRNAPAHRI 393 Haemophilus inf...
WP_011590291 325 NTLLGAEKQSD--------RFGYSEKANKLGLRIIEKLNKIVSEHEAKHVNCFGGHYVLHAQVGIDL---DQNVSPGCRI 393 Clostridium per...
WP_011755330 324 SIVLEHEGVEA--------RYGHDDVADELALQILTRVHELVAARPMPYCEGNGGRAFLHSQSGIDS---DLGVTAGCRI 392 Nocardioides sp...
WP_001111698 327 NLLCENAGLNA--------RYGKNETANELGYRISAQLADFVENTPVKY--GWKQRALLHAQSGISS---DSGTTPGARL 393 Salmonella ente...
WP_005313665 320 NLLMDKENLPE--------RYGHDEEANQLGYRISAQLSRHVSETPQVH--AWGGRALLHSQGGLSV---DRDVTPGVRI 386 Aeromonas salmo...
WP_011080152 325 DTLQTKSSLSG--------QYGLDSQANQLGVKISQRLAQLLEERPVKY--GWQQRALLHAQGGISL---DIDVTPGVRI 391 Vibrio vulnificus
WP_012157134 320 NILQGSPDFNEdnidkpssHYGHNAAANALGHKISKALDGIVKSTQVKY--GYNGLALLHSQGGISI---DKDVTPGVRI 394 Shewanella peal...
WP_011343802 328 EHLTGL-------------KLGKDKEALYYAEQVLKTAKDTLESVPGAYCYGTGGRIGFHAQSGIDS---DIDVTPGVRI 391 Carboxydothermu...
WP_012064669 321 NHILEIENKDE--------KFGQSDDGDKIAHEILSTLEQAVNNHKAPYCERTNNHYLLHAQVGASLsqaDKENTPAHRI 392 Alkaliphilus me...
WP_006807750 317 NKIIGAEKKED--------KFGWSKYADDLGVKIIDKLQELVHNYKVKYCEITDNHYVLHAQVGIDT---DHGISPGCRI 385 Leptotrichia go...
WP_012048409 318 NHLLKTSELKD--------RFGHSEKANELGIKIIEKMYNIVNSNVNEYCSATDGHFLLHAQVGIET---DKGTSPGCRI 386 Clostridium bot...
WP_005687007 394 RVGEEPTLLAHLKQSAPFHKYFPSGTGDLFAFDQTYVDHCDAVVDIIDGAFSLGYRYITTYLKNTDLIRVTGYLVKKSEV 473 Haemophilus inf...
WP_011590291 394 PVGEEPELFNHIMQSAPFHKYFYNGIGDIFVFEDTYNDHPEALVDIIKGAFNSGIRYMSVYGSGADVVRVTGYLAKRSEV 473 Clostridium per...
WP_011755330 393 PVGDEPDLLRHLRTITPNHALFPAGISDVLAFDDTARRNPDAVVDVIRGAFRTGMRDVTFNLDSNDFIRITGYLVRKSDL 472 Nocardioides sp...
WP_001111698 394 PYGDEPDPITHLQTVAPHHAFYHAGISDILTLDETIKRNPQALVQLCLGAFKAGMREFTANVSGNDLVRVTGYMVRLSDL 473 Salmonella ente...
WP_005313665 387 PYGQEPDPASHVLALAPHHGFYHSGISEILTLDPTIRQNPQALLQLCKGALAIGMREFTANVADSDLVRVTGYMIRKSDV 466 Aeromonas salmo...
WP_011080152 392 AYGHEPDPVSYVLANAPHHAFYPSGISDILTIDETVKDNPEAMYNLCKGALAAGYREFTANVASNDLVRVTGYMVKLSDI 471 Vibrio vulnificus
WP_012157134 395 PYGTEPNPIAHIQALAEHHQYYTSGISDILTIDETVKANPQAMMQLCKGALSLGFREFTANVASNDLVRVTGYMIKLSDI 474 Shewanella peal...
WP_011343802 392 KYGEEPDIFTQIKTEGRLHKYFDTGISDIYIFDRTARENPEGVLKIIKGALKEGIRVFSFNTSDSEFIRITGYLVKRTDV 471 Carboxydothermu...
WP_012064669 393 PVGDEPILPLHLTQSAQFHQYFPSGVGDLFAFDQTYLNNLDAVVDIIEGAFNQGYRYITTYLQDSDLIRVTGYLVKRSEV 472 Alkaliphilus me...
WP_006807750 386 PIGDEPVLPKHIKQTARFHPYFKSGIGDIFPFDEMASKNPASILDIIKGAFKEGMRYFSVYSTDADVIRITGYLVKKSEM 465 Leptotrichia go...
WP_012048409 387 PIGEEPNLPIHLLQSAKFHRYFPSGIGDIFPFESTAKKNPESILDIINGAFNEGMRYFSLYASDSDVIRITGYLVKLSDI 466 Clostridium bot...
WP_005687007 474 EKYRKGEVALRDTTWYGSGTDECANVFDRQLR 505 Haemophilus influenzae
WP_011590291 474 EKLERGEAVLNNTDLFAMGAKNNCHAFERKIR 505 Clostridium perfringens
WP_011755330 473 AKI--EHGARHDSTFLAAGSVAQSHVDRRVPK 502 Nocardioides sp. JS614
WP_001111698 474 TKF-RAEGSRTNTTWLGEEAARNTRILERQPR 504 Salmonella enterica
WP_005313665 467 ARF-ATEGSRLQTTCLGAEASELTAIRQRAPR 497 Aeromonas salmonicida
WP_011080152 472 EKF-AQLGSRSNTTFLGAEAAKNTAILARRPR 502 Vibrio vulnificus
WP_012157134 475 ASF-KAEGSRTNTTWLGAEAAQNTKILERQPR 505 Shewanella pealeana
WP_011343802 472 LKYEKGEVLREDTVKLGAASIKNNNTEARKVR 503 Carboxydothermus hydrogenoformans
WP_012064669 473 EKARANEVVLRNTAMLGMGTDDNANVFNRRTR 504 Alkaliphilus metalliredigens
WP_006807750 466 EKLYKNEQVMQQTVVFGLGARENSRILERKVR 497 Leptotrichia goodfellowii
WP_012048409 467 KKLDKGEQVLQDTVALGLGAVKNSRILERKVR 498 Clostridium botulinum
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