4TVX


Conserved Protein Domain Family
casD_Cas5e

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TIGR01868: casD_Cas5e 
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CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI
CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is part of the ECOLI subtype CRISPR/Cas locus, and now characterized as part of the CASCADE complex of that system. It shares a small N-terminal homology region with members of several other CRISPR/Cas subtypes, and we view the families that share this region as being Cas5.
Statistics
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PSSM-Id: 273842
Aligned: 6 rows
Threshold Bit Score: 220.826
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4TVX_H         3 SYLILRLAGPMQAWGQPTFEGTRPTGRFPTRSGLLGLLGACLGIQRDDTsslQALSESVQFAVRCD-------ELILDDR 75  Escherichia col...
ZP_00056831    2 SGFLLRLAGPMQSWGEHSMFGERDTLPYPSRSGLIGMFAAAQGVRRGDP---LDRYKELKFTVRVDrp----gVRLVDFH 74  Thermobifida fusca
ZP_00091908    2 ATLLLCLQGPMQSWGTTSRFDERDTQLEPSKSGVLGLVCAALGRDRREP---LEDLAALRMGVRVDre----gVPLRDYQ 74  Azotobacter vin...
ZP_00129979    3 QYLTFQIYGPLQAYGTVAVGEIRPTSTMPTRSAVLGILAAAIGIRRDEEtrlAELRDGYRVAVREDap----gKVMLDYH 78  Desulfovibrio d...
ZP_00014241    5 RWLIVHLEAPLLAFGGVAIDNVGVTRDFPAASMLTGLFANALGWRRTEWerhQRLQDRLIFAARREren--ptGVLTDTQ 82  Rhodospirillum ...
WP_010933632   4 PFILLWLEAPLQSWGADSRFGRRDTLDFPTKSGLLGLLCCALGAGGEQRellDEMAELRQTVLAFQrergerpPLLRDFQ 83  Chlorobaculum t...
4TVX_H        76 RVSvTg---LRDYHTVLGAREDY-Rg-LKSHETIQTWREYLCDASFTVALWLTPHATmvi-seLEKAVLKPRYTPYLGRR 149 Escherichia col...
ZP_00056831   75 TIG-Gg---LPKERTVPTAAGER-R--DPKKATIVTSRSYLADAVFTVAVTGPEADT------IADALAAPYWQPYLGRR 141 Thermobifida fusca
ZP_00091908   75 TAT-G--------VLIASGKADP-R------RTVVSPRFYLSDAVFLVGLESADSALle---rIQGALRRPVWPLALGRK 135 Azotobacter vin...
ZP_00129979   79 TIQ-Tp--gARGKRQLHCRRDEL-L--LTEPNTILSRREYLMDALFTVCLWQANHTVpyslqeIARALRSPRWTIGLGRK 152 Desulfovibrio d...
ZP_00014241   83 NAK-Ls---KTERGWTTWGEPEG-RdgASYGAPHRRRRDYHGDASVVVALRLDAAEEpal-ddLAAALDRPARPLFIGRK 156 Rhodospirillum ...
WP_010933632  84 MVG-SgyneKDKWETLLIPKKRDgGg-AVGGGTKMTYRYYLQEAAFAAALEVPAARAg----eFAEALKAPVWDIYFGRK 157 Chlorobaculum t...
4TVX_H       150 SCPLTHPLFLGT-CQASDPQKALLNYEPVGGDIYS----------------EESVTGHHLKFTARDEPMITLPRQFASRE 212 Escherichia col...
ZP_00056831  142 AFVPDPLLVLRR-RVADPVRELVEAVPLPHRRVEEdaatvlv--dliyeegEYPDTRTLTVLNDVPLSFDSKSRRYSTRQ 218 Thermobifida fusca
ZP_00091908  136 SFVPGMPVFLADgLLHADLLSALSGYPPLVPWAPG-----------------GSVRLALEDLREGSVRLDQPVGPFAERR 198 Azotobacter vin...
ZP_00129979  153 SCPPALPFAPKI-TDHTTPQEAVAAYPADKLVSAGlrspqvm-----rmlldtEGPHTDTETTVRDVPLHHGRRQFAERK 226 Desulfovibrio d...
ZP_00014241  157 SCVPSRPLRGKEfVVAATAYQALQALRSDGNDRQRdgaaaerravwpvgegPVDGPAVHRIHDLPDLRNWRTGLHGGTRP 236 Rhodospirillum ...
WP_010933632 158 CCAPTDMVFRGE-FD-SEVAALEAASSIAKEKRLReafrvr------dyapgDEGEAEVVALNDVPVRFGPKK-KYRQRR 228 Chlorobaculum t...
4TVX_H       213 WYVI 216 Escherichia coli K-12
ZP_00056831  219 IRVV 222 Thermobifida fusca
ZP_00091908  199 FGPR 202 Azotobacter vinelandii
ZP_00129979  227 VREL 230 Desulfovibrio desulfuricans G20
ZP_00014241  237 IVEG 240 Rhodospirillum rubrum
WP_010933632 229 VTII 232 Chlorobaculum tepidum
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