1W0U,1IV6,2JUH,2AJE,2ROH,2CKX,2QHB,1ITY,1XG1,1VF9,1VFC,1W0U,1W0T,1W0T,1BA5


Conserved Protein Domain Family
SANT_TRF

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cd11660: SANT_TRF 
Click on image for an interactive view with Cn3D
Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family
Human telomere repeat binding factors, TRF1 and TRF2, function as part of the 6 component shelterin complex. TRF2 binds DNA and recruits RAP1 (via binding to the RAP1 protein c-terminal (RCT)) and TIN2 in the protection of telomeres from DNA repair machinery. Metazoan shelterin consists of 3 DNA binding proteins (TRF2, TRF1, and POT1) and 3 recruited proteins that bind to one or more of these DNA-binding proteins (RAP1, TIN2, TPP1). Schizosaccharomyces pombe TAZ1 is an orthlog and binds RAP1. Human TRF1 and TRF2 bind double-stranded DNA. hTRF2 consists of a basic N-terminus, a TRF homology domain, the RAP1 binding motif (RBM), the TIN2 binding motif (TBM) and a myb-like DNA binding domain, SANT, named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. Tandem copies of the domain bind telomeric DNA tandem repeats as part of the capping complex. The single myb-like domain of TRF-type proteins is similar to the tandem myb_like domains found in yeast RAP1.
Statistics
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PSSM-Id: 212558
Aligned: 94 rows
Threshold Bit Score: 43.3247
Created: 27-Feb-2012
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
DNA binding
Conserved site includes 15 residues -Click on image for an interactive view with Cn3D
Feature 1:DNA binding site [nucleic acid binding site]
Evidence:
  • Structure:1W0U: human TRF2 binds telomeric DNA, contacts at 4A
  • Structure:1IV6: human TRF1 binds DNA, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1         ###                 # ##            # ### ### ##   
1W0U_B          3 QKWTVEESEWVKAGVQKYGeGNWAAISKNYPf--vNRTAVMIKDRWRTMKR 51   human
XP_002111024  373 VKFTTAEDSLLAIGLSKFN-KKWNLIHEHLLp---TKTAKQIRIRCKNLAS 419  Trichoplax adhaerens
XP_002462936  203 KAWSKEEDADLAAGVQKYGeGNWEDILHRCNfd-sTRTPDQLSQRWALKRP 252  sorghum
NP_492411     410 ERFTLVEDEQLLYAVKVFGkGNWAKCQMLLP----KKTSRQLRRRYLQLIA 456  nematode
EAZ23408      205 KPWSREEDMELGAGVQKHGeGNWMEILHKYKfd-sSRTHLQLQQRWALICK 254  Japanese rice
2160164       172 KRWSAEEDEELFAAVKRCGeGNWAHIVKGDFr--gERTASQLSQSFCSVSY 220  thale cress
XP_635530     903 LKFTGGEDLLLLMGVKRFGtFNWRIIQKRYFp---NKTDDQLFHRYKNLLS 950  Dictyostelium discoideum AX4
XP_002108123  316 GAFTKEEDQLLEEGIKKYGsGHWRKIQQTFLp---WRTDIQIRDRWINVLD 363  Trichoplax adhaerens
XP_502676     153 LRWTQEETADLMEGCKVHGvGNWKKILTDPRfrfnNRTAVDLKDRFRTCFP 203  Yarrowia lipolytica CLIB122
XP_002127137   67 DEWSKQEDENLMEGVEKYGlGSWNDIQDAFPll-aHKEPDACYNRWQELCK 116  Ciona intestinalis

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