2XPL,5IY6,5ODD


Conserved Protein Domain Family
Med26

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pfam08711: Med26 
TFIIS helical bundle-like domain
Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species {1-2]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Mediator exists in two major forms in human cells: a smaller form that interacts strongly with pol II and activates transcription, and a large form that does not interact strongly with pol II and does not directly activate transcription. Notably, the 'small' and 'large' Mediator complexes differ in their subunit composition: the Med26 subunit preferentially associates with the small, active complex, whereas cdk8, cyclin C, Med12 and Med13 associate with the large Mediator complex. This family includesthe C terminal region of a number of eukaryotic hypothetical proteins which are homologous to the Saccharomyces cerevisiae protein IWS1. IWS1 is known to be an Pol II transcription elongation factor and interacts with Spt6 and Spt5.
Statistics
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PSSM-Id: 462573
Aligned: 416 rows
Threshold Bit Score: 32.4878
Created: 23-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2XPL_A        92 DVLKTMKIH-----KeHLVTSGVGKIVYFYSiNpkeSKEVRASAKALVQKWTnEV 141  Encephalitozoon cuniculi
CCE27013     423 QVLDILDKFprmtrN-KIQDSKIETTIQGL--TtsnHDEVASKSKKLLEEWS-KL 473 
XP_008092601 430 QVLDILDKFprltrN-KIEGSKIETTIDGL--TqseHEEVSAKSKRLLDEWS-KL 480 
Q6C5G5       351 MLLRVLQKWpritkN-KISSSQIENVVKSL--TsndNSDIATIAQELLSEWA-NL 401  Yarrowia lipolytica CLIB122
EDK37420     373 QTLTILSKWpkvtrN-KISSSQIEDVVRQLH-KqskNKKITQLSSDLLKEWG-NL 424 
EEQ41014     371 RILSILRRWptmtrN-KIESSQIEDVVKQIS-StseNQDIQNLAAGLLSDWS-KL 422 
CCE44916     373 MVLEILSRWpamtkN-RISSSQIEDVVKEIE-AnttNEEIKQLASNLLSQWS-VL 424 
XP_006688342 374 KILKVLAKWpkmtrN-KIQSSQIEDVVKDIR-AhtnNREIRSLSVALLDEWG-KL 425 
ABN66198     385 PILEILGKWpkvtrN-KISSSQIESAIQDIK-SstsNEEIRTLSTELLNEWS-KL 436 
XP_007374274 376 TILEILSKWpkvtrN-KISSSQIEEVIKEIE-RkydNETIKSLASDLLHEWS-KL 427 
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