Conserved Protein Domain Family
Lir1

?
pfam07207: Lir1 
Light regulated protein Lir1
This family consists of several plant specific light regulated Lir1 proteins. Lir1 mRNA accumulates in the light, reaching maximum and minimum steady-state levels at the end of the light and dark period, respectively. Plants germinated in the dark have very low levels of lir1 mRNA, whereas plants germinated in continuous light express lir1 at an intermediate but constant level. It is thought that lir1 expression is controlled by light and a circadian clock. The exact function of this family is unclear.
Statistics
?
PSSM-Id: 399884
Aligned: 7 rows
Threshold Bit Score: 161.959
Created: 22-Mar-2022
Updated: 17-Oct-2022
Structure
?
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Q96500         1 MQGALFIkPTILLPLPSSVSSPKLTFLLPHATkASRLSSLRSNNSSSSSslTSDPNTVDYNSSIlSVFPAEACEVISGYA 80  thale cress
XP_002275869   1 MQAALCF-APTLLPLTPSRNFATPASSSPPKL-ATSLTSRRPPIKAAAA--AYDSSTVDYNSMT-SVFPAEACDVIGGEA 75 
XP_002512845   1 MQAALSI-APPVFPVKPSKNLSQ-VILSPPQLgASSLAPRASPIKAAYAtvAYDTSTVDYSSVI-SVFPAEACETLGGDA 77 
KRH06835       1 MQTALTFaAPNVVPLAPTKSVSH-ITIFPTKLkAPRSSPRYSPIRVATV--EPDTSTVDYNSAF-SVFPAEACETVGGEA 76 
XP_015617278   1 MQTAASSvVGLSAVLPAAVKGRSLQIQAPRRVa--------LRVRAAAAavAVEAAEVDYSSNI-SVFPMEACDLIGGEA 71 
EMS59006     145 MQAA----VALSAVLPVAVRGRSAARRSSATVaGGGRRTVGAGVRASAA----AAPEADYSSSV-SVFPMEACDLVGGEA 215
XP_015688279 145 MQAATSSvVGLSAVLPAAVNAK---MQARPRVaATPTRALTVRVRASAAv-AVEAAEVDYSSNI-SVFPMEACDLIGGEA 219 malo sina
Q96500        81 CSADIYPEVKLDTKPVS--RPVASEPVDREYEEYNSPKTVFREEACDDLGGEFCEP 134 thale cress
XP_002275869  76 CLADCYPEVRLKQEARNraARTASEVTERDYYEYNDAKTVFRAEACDDLGGLFCER 131
XP_002512845  78 CLANIFPEVKLEARNDAaaARIASEPIEREYLEYNDAKTVFCAEACDDLGGEFCSR 133
KRH06835      77 CMAEMYPETKLQPEAKT--PRVVTENVEREYLEYDDPKTVFRGEACDDLGGTFCET 130
XP_015617278  72 CNVQMYPEAKLSSSAAVavSRAAAEEVDRDYLSYDEPTTVFPEEACDDLGGEFCKA 127
EMS59006     216 CDAQMYPETKLGAGAGGpaAAARAPEVEREYLAYDEPKTVFPDEACDDLGGEFCEA 271
XP_015688279 220 CNVQMYPEAKLPSSSSAtaAAARAEEVERDYLSYDEPRTVFPEEACDDLGGEFCEA 275 malo sina
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap