Conserved Protein Domain Family
Senescence

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pfam06911: Senescence 
Senescence domain
This is the AAA ATPase senescence domain (SC) found at the C-terminal of plant senescence-associated proteins and spartin. In Hemerocallis, petals a genetically based program that leads to senescence and cell death approximately 24 hours after the flower opens, and it is believed that senescence proteins produced around that time have a role in this program. This domain is also present at the C-terminal of Spartin, a protein from higher vertebrates associated with mitochondrial membranes and transportation along microtubules. Spartin functions presynaptically with endocytic adaptor Eps15 to regulate synaptic growth and function. Mutations in human spartin gene cause Troyer syndrome, a hereditary spastic paraplegia. This AAA ATPase domain, similar to other AAA proteins contain an alpha/beta nucleotide-binding domain (NBD) and a smaller four-helix bundle domain (HBD). Uniquely among AAA structures, spastin has two helices (N-terminal alpha1 and C-terminal alpha11) hat embrace the NBD.
Statistics
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PSSM-Id: 462037
Aligned: 106 rows
Threshold Bit Score: 93.4663
Created: 22-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
EKM56059                      293 DWLMKGATLISQAISGSTSLLVTGITSASSFYIAHSKPGSPKIPpgdaspnpgLTPSASSNaLAKAHAFSGSARAVTQRT 372
Q8MNF7                        367 DKVESTSQSISKGLISGGTYFAKGAGKVGEVYKNNTKKYDGPEMtedq-krqlEDPNSDLN---KTGKTTDKMAQGTSSV 442 Dictyostelium discoideum...
EGC38615                      452 GKVEKASHTISRGLVSGGTYFAKGASKVGEFYKSNSKKYEGPEMteeq-rrelEDPNSKIN---KEGKNSDKMAQGTASA 527
EGG22786                      309 GGLEKGSLVVSKGLVSGGQYFAKGASKIGDLYKNNSKKYEGPEMteeq-rralEDPNHESN---KSVRDAEKFASGTSSV 384
EFA80530                      308 TSLDNGGQTLASSIEAASTMISLGLRGTGYYLKSNLEKNKSPMQ---------VSPVVSNS-IGYLKSTTPYAAQYSSLL 377
XP_003283820                  292 SGIDSGSQSIVNGILTASAMISIGLRGGGFLLKSKLDKNEEPAT---------VSPFVIKS-VDAIKGVTPYAKQGSLFL 361
Q54XZ6                        344 NGVDSGSQTIAACILSASSIISLSLRGGGYKLMSTMEKNEKPAE---------VSPIIVNT-VEGVKSVTSYAKQGSSYI 413 Dictyostelium discoideum AX4...
Q23CJ2                        152 KQLR--GEKIRNGLINLGERVAKRIEKRKERIINRISRPR-YIQ---------IRPETLER-IRKLRIFSDRIFKVSKDV 218 Tetrahymena thermophila SB210...
WGS:AAGF:cds.TTHERM_00649270A 141 GYLQKGGDMIRTGIILGGNAIAYGIKIGGRLIKSTFSKPEVKE----------IDPQTLQK-VQMAHATSDYILTYTQQQ 209
Q23CJ1                        149 GYLQKGGDFIRSGLITGAGYLAKGIQSGGQYLRSKISKPQKKE----------VKPETIQK-VKMAKATSSAVLIFTQTQ 217 Tetrahymena thermophila SB210...
EKM56059                      373 SDMIGDMITRAMGGKSkstsptpsnsapasasstppyaspelqgppppyavytPkrrlqvtrgqsektvseseeaeevep 452
Q8MNF7                        443 VQGISKGFGFVGSKAAqgvhstswykere------------akkkeeervngkDek------------------------ 486 Dictyostelium discoideum...
EGC38615                      528 TKAISQGFGWVGSKISqgvhstdwykere------------akkkeeerlngkDek------------------------ 571
EGG22786                      385 KKGIVGAFGFAGSKISqgvrstdwykere-----------ekkkqeesedkgkSek------------------------ 429
EFA80530                      378 IEKVSDAVGTVGNGIIsgfkmivpts------------------vsssndnetL-------------------------- 413
XP_003283820                  362 IDSVSTVVAGVGNGIVsgvkyfipen------------------qngekenetF-------------------------- 397
Q54XZ6                        414 IGSLSSAVATVGGGVVnlvrpsdgddcecec-------ekskeeeekeeeniyK-------------------------- 460 Dictyostelium discoideum AX4...
Q23CJ2                        219 LNGMINVSKKIMSKLAnkigdtkigkr---------------ikknrvycdfkE-------------------------- 257 Tetrahymena thermophila SB210...
WGS:AAGF:cds.TTHERM_00649270A 210 LEYILDNAKSIGQEIFsqvaqsqtg--------------------qqiqqhknY-------------------------- 243
Q23CJ1                        218 ISALIQGAKVIGEELSnqvgdsdtg--------------------kkikahknY-------------------------- 251 Tetrahymena thermophila SB210...
EKM56059                      453 etsKGPPGIKDKLFMSANLIITTVDDSARRVFEVGTDSLGAVVGHKYGPEAQRSTHLASHTARNIVLVYVD-----MRGF 527
Q8MNF7                        487 --kEAGSQMAGSGIGAITTVFGGLQEGILISSRGVRDASVDATRHTSGDFAAEKSKKKWDSAGNLTVSVVN-----IVSI 559 Dictyostelium discoideum...
EGC38615                      572 --kEAGSGMASTGVGALKNIWGGLEEGVLISARGVRDASVDAKRHTSGDFEAEKSRKKWDSAGNATISVVN-----IVSL 644
EGG22786                      430 --kSAAGGVGSAGLSAFKNVWGGLEEGVLISARGVRDASVDAKRHTNGDYEAEISKRKWNSAGNLTVSVVN-----VVSI 502
EFA80530                      414 ---NAAAELGKSSIKAITSISGAITSGLAQIAEEMSDTTVDVVNHKLGQHVANVTNDTFSISKDVINTALNlqlgsAKGV 490
XP_003283820                  398 ---NAAVDFGKQSFKSISSIVGAVGDGISQIYDEATGTTVDVLNHKYGEHVATITDKSFSASKDIFDTAMN-----IRGL 469
Q54XZ6                        461 ---NEALNFGKTTIKSIGSIIGAIGDGISMVYDEATGTTVDLVNYKFGEHAAKVTDQTISISKDVFDTAMN-----VKNL 532 Dictyostelium discoideum AX4...
Q23CJ2                        258 --------ALKNGIKSIAAVYDGMIEAKHLVQLALQDAVTGIVAAKYGEQAGQLTNDLLGIRMNYQ----------QMHH 319 Tetrahymena thermophila SB210...
WGS:AAGF:cds.TTHERM_00649270A 244 ---ADIRNVTKGTINAVASIYDGLFESLATIARGFQSTTTSVVNAKYGQQAGLLVDHSMDTVANIGNIFYQ-----VNQQ 315
Q23CJ1                        252 ---EDAKNIAKGTVHVFAAIYDGMFEGLCAIGRGFQAATTDVVQAQYGEGAGQLAHESFETAANVGNIAYA-----YKTE 323 Tetrahymena thermophila SB210...
EKM56059                      528 ARRALLKRAGK 538
Q8MNF7                        560 LGATWIKAAIY 570 Dictyostelium discoideum
EGC38615                      645 LSVTWIKGALY 655
EGG22786                      503 VSTTWIKGALY 513
EFA80530                      491 AIKVMTNASGQ 501
XP_003283820                  470 GFN-IAKKGGK 479
Q54XZ6                        533 PIN-VVKGGGK 542 Dictyostelium discoideum AX4
Q23CJ2                        320 IEQYVKQDQAK 330 Tetrahymena thermophila SB210
WGS:AAGF:cds.TTHERM_00649270A 316 ASKAVQEASQS 326
Q23CJ1                        324 AIKAIEQGTKS 334 Tetrahymena thermophila SB210
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