2XST


Conserved Protein Domain Family
lipocalin_15-like

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cd19422: lipocalin_15-like 
lipocalin 15 and similar proteins, such as chicken CALbeta
This subfamily includes uncharacterized human lipocalin 15, and chicken chondrogenesis-associated lipocalin (CAL) beta which is associated with chondrogenesis and inflammation. It belongs to the lipocalin/cytosolic fatty-acid binding protein family which have a large beta-barrel ligand-binding cavity. Lipocalins are mainly low molecular weight extracellular proteins that bind principally small hydrophobic ligands, and form covalent or non-covalent complexes with soluble macromolecules, as well as membrane bound-receptors. They participate in processes such as ligand transport, modulation of cell growth and metabolism, regulation of immune response, smell reception, tissue development and animal behavior. Cytosolic fatty-acid binding proteins, also bind hydrophobic ligands in a non-covalent, reversible manner, and have been implicated in intracellular uptake, transport and storage of hydrophobic ligands, regulation of lipid metabolism and sequestration of excess toxic fatty acids, as well as in signaling, gene expression, inflammation, cell growth and proliferation, and cancer development.
Statistics
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PSSM-Id: 381197
Aligned: 4 rows
Threshold Bit Score: 250.933
Created: 16-Feb-2007
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
ligand binding
Conserved site includes 21 residues -Click on image for an interactive view with Cn3D
Feature 1:ligand binding cavity [chemical binding site]
Evidence:
  • Comment:hydrophobic cavity binds different hydrophobic ligands; ligands are bound within the beta-barrel in a central internal water-filled cavity lined with polar and hydrophobic amino acids
  • Comment:based on lipocalin/cytosolic fatty-acid binding protein family members with structure

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1         #   #                       # #       # # #          # # #          # #    # # 
2XST_A        16 KFSGLWYVVSMASDCRVFLGKKDhLSMSTRAIRPTEEGGLHVHMEFPgaDGCNQVDAEYLKVGsEGHFRVPAl-gYLDVR 94  human
XP_003217234  31 KFAGSWHLMAGASDCPIFQSMKNlMTTSVAIIRPLPNGDMTFLTGYPlqEECKPIEIHFKKTEqPGRFVIDG---KQEMR 107 green anole
AAL32453      45 KFAGMWHMMAAVSNCPVFLGMKDkMTSSATAVSFTPEGHMTMETVIPlpEECKKIMMLFQQSGqAGHYIGTEkgeKRDLR 124 chicken
XP_010114006   6 QFAGRWHVAAVASNCSVFLKMKDeMKSSITTISFMPEGDLDMKLAWPlpDGCQMFELVFQKSGeAGHYTAAEd--KRDLR 83  Macqueen's bustard
Feature 1        #        # # #           # # #                                   
2XST_A        95 IVDTDYSSFAVLYIYKELEG-ALSTMVQLYSRTQDVSPQALKSFQDFYPTLGLPKDMMVMLPQSD 158 human
XP_003217234 108 VMETDYSEVAYLYTFKESEGePSSTTVQVLTRNPELTPEILEKFKAYYHSVGLSDDMMAILPKSD 172 green anole
AAL32453     125 VMDTDYEHYAIVYSQQKDSQ-EPSTMLQLYTRNQDMSPQLLQKFKELFHSMGLTEDMLVVLPHSD 188 chicken
XP_010114006  84 VMETDYSSYAIVHELQRKEQ-ESSTGLQLLTREQDASPQLLQKFKELIPTLGLTEDMLAILPKSD 147 Macqueen's bustard

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